Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211807g00007 ATGTCACTCCACGCTTTCAAGGAAACTCTACTAAGACCTTGCACCTCAACTCAACAACAATCTTCAACTTCTTCTTCTTCGCTTTCAATTTCCCAATCCCAAACCCAAACCCGCCCTTACTCCATTCTTCACGATTCACACCTTCCCATCTCAAGAAAACCCCCAAAATCCTCTCTTTCCCAGCAGCTTCGCCGCCTCCAAGAAGACGACCCCGACGCCGATGCCAACGACCACGCCTTTTCTGGCCCGCCGCTTGGGCTCCACAATTCGGTCAAGAAGCGAGAGCAGGAAGAGAAAATCCGTGAAGATGAAAAAGAAGATGATGTTGGTGATGACGACGAAGAAGAAGAACAGAAGGAACTGCAGGTGAAGAGGGGCAAATTCGGAAGAGCGAAAATTTCACAGTCTCAGTTCGAACACACTGGACCGTTTGAGCCTCTTGTCCTCTCATCAGATGGAGAAGTTCCAGTCATTCAGGTTCCTGCATCTATAAATTGTAGACTGCTTGAGCATCAAAGAGAGGGAGTGAGATTTCTGTATGGTTTGTACAAGAACAATCATGGAGGTATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTGCTGCTATCTTTGGTAAGGAAAGAGACTCTATACCTGGTGAAAACCATGAAGAGAAGAGAGACCCTGTATTGATCATCTGTCCAACTTCTGTCATTCACAACTGGGAGGGTGAGTTCTCTAAGTGGGCTAACTTCAGTGTATCCATTTATCATGGTGCAAACCGGGATCTGATACATGAAAAAATAGAAGCAAATGGAGTGGAGATACTTATTACAAGTTTTGACACTTACCGAATTCATGGAAGTTCCTTGTCAGATTTCAAATGGGGCATTGTGATTGTTGATGAGGCTCACCGGCTTAAGAATGATAAATCAAAACTCTATCAAGCATGTTTAGAAATTAAAACCTTGAGACGTTATGGTCTTACTGGGACCATAATGCAAAATAAGATAATGGAGTTGTTTAATCTCTTTGACTGGGTTGCACCTGGATCACTTGGGACACGGGAGCACTTTCGTGAGTTCTATGATGAACCCCTTAAGCATGGTCAGAGGTCATCTGCTCCTGAAAAGTTTGTCCAAATTGCTAATAGAAGAAAACAACACCTTGTGAATGTTCTTCATAAATATTTGTTGAGAAGGACAAAGGAAGAGACTATTGGACATCTTATGATGGGGAAGGAAGATAACATCGTGTTCTGTGCTATGAGTGATTTGCAAAGACGTGTTTACAAGAGAATGTTACAGCTTCCTGATATCCAATGCCTCATAAATAAGGACCTGCCTTGTAGTTGTGGTAGCCCACTTACACAAGTTGAATGTTGTAAGAGGACAGTGCCAGATGGAATCATTTGGCCTTACCTTCACCAAGATAACCCTGATGGTTGTGATTCATGCCCTTTTTGCATTGTCCTTCCGTGCCTTGTCAAGCTTCAACAGATAAGCAATCACCTTGAGTTGATTAAGCCAAACCCCAAAGATGACCCTGACAAGCAAAGCAAAGACGCAGAGTTTGCTGCTGCTGTCTTTGGCTCCGATATTGATTTGGTTGGTGGGAATATGCAGAGTGAGAGTTTCATGGATCTAAGTGATGTGAAACATTGTGGAAAAATGAGAGCACTTGAAAAACTTCTGTACTCATGGATTTCACATGGCGACAAAGTTCTTTTGTTTAGCTATTCAGTGAGGATGCTTGACATACTGGAGAAATTTCTCATACGGAAAGGCTACTGCTTCTCAAGACTTGATGGGTCTACTCCAATGAATTTGCGCCAGTCTTCAGTTGATGATTTCAACTCTAGTCCTAGCAAACAAGTATTTTTGATATCAACTCGTGCCGGTGGGCTTGGGTTAAACCTTGTCAGTGCAAACCGGGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGTTTTGGGCAGAAGCGACATGTTCTGGTGTTCCGTCTTCTTGCAGCCGGTTCGCTTGAAGAACTTGTTTATTCTCGTCAGGTGTATAAGCAGCAGCTTTCAAACATTGCTGTCTCCGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAGGAATTTCAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGGGATTTATCTGACAAGCTATTTACTAGTGAAATCATTAAACTGCATCAGATGGGAAAGGAACATCACAATACAATAGAACGGGAAAAAGAAAATCTTTCAGAAGAAACTGATTCTCTAACATCGGAGTCTGAAACTGAAATATGTGCTGGAACTGCGACCACTGCAGCAAGTATACCAGATTTTGAAGACCTTGGAATTGTGTACGCTCATCGCAACGAAGACATAGTCAACTATGGACCTGTGATTCAGGGGAAGATAGATAGCAGCATCCCTTCAAAAAGTGATAGCTTAGGCAAGCCAAGCATATCTTCAGTCCACCAAAGAAACAAACCAGATTGTGCACCTAAAAAACAGAAAGCTCCTTTGATTGATGAAAGTAAGAGAAGCCAATATAGACTGCTTGCACATTCTATGGGCATGGAAGAGCTTGCATTTAGCAAATGGTTACTGTCAGCAACTCCTAAGGAGAGGGAAAAAGTGCTTCAAGACTTCAAGAAGAAAAAGAAGATGCCTAATGGTTAA 2724 0.4255 MSLHAFKETLLRPCTSTQQQSSTSSSSLSISQSQTQTRPYSILHDSHLPISRKPPKSSLSQQLRRLQEDDPDADANDHAFSGPPLGLHNSVKKREQEEKIREDEKEDDVGDDDEEEEQKELQVKRGKFGRAKISQSQFEHTGPFEPLVLSSDGEVPVIQVPASINCRLLEHQREGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAIFGKERDSIPGENHEEKRDPVLIICPTSVIHNWEGEFSKWANFSVSIYHGANRDLIHEKIEANGVEILITSFDTYRIHGSSLSDFKWGIVIVDEAHRLKNDKSKLYQACLEIKTLRRYGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSSAPEKFVQIANRRKQHLVNVLHKYLLRRTKEETIGHLMMGKEDNIVFCAMSDLQRRVYKRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRTVPDGIIWPYLHQDNPDGCDSCPFCIVLPCLVKLQQISNHLELIKPNPKDDPDKQSKDAEFAAAVFGSDIDLVGGNMQSESFMDLSDVKHCGKMRALEKLLYSWISHGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPMNLRQSSVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVLVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIIKLHQMGKEHHNTIEREKENLSEETDSLTSESETEICAGTATTAASIPDFEDLGIVYAHRNEDIVNYGPVIQGKIDSSIPSKSDSLGKPSISSVHQRNKPDCAPKKQKAPLIDESKRSQYRLLAHSMGMEELAFSKWLLSATPKEREKVLQDFKKKKKMPNG 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211807g00007 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 401 IPR027417 -
Stsc211807g00007 907 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 560 713 IPR001650 -
Stsc211807g00007 907 SMART ultradead3 164 359 IPR014001 -
Stsc211807g00007 907 Pfam SNF2-related domain 184 441 IPR000330 GO:0005524|GO:0140658
Stsc211807g00007 907 MobiDBLite consensus disorder prediction 1 123 - -
Stsc211807g00007 907 Coils Coil 756 776 - -
Stsc211807g00007 907 PANTHER SNF2/RAD54 FAMILY MEMBER 31 900 - -
Stsc211807g00007 907 Pfam Helicase conserved C-terminal domain 557 669 IPR001650 -
Stsc211807g00007 907 MobiDBLite consensus disorder prediction 823 854 - -
Stsc211807g00007 907 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 297 306 IPR002464 -
Stsc211807g00007 907 Gene3D - 147 400 IPR038718 -
Stsc211807g00007 907 Gene3D - 413 783 IPR027417 -
Stsc211807g00007 907 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 351 IPR014001 -
Stsc211807g00007 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 405 724 IPR027417 -
Stsc211807g00007 907 CDD SF2_C_SNF 551 680 - -
Stsc211807g00007 907 MobiDBLite consensus disorder prediction 823 842 - -
Stsc211807g00007 907 MobiDBLite consensus disorder prediction 11 42 - -
Stsc211807g00007 907 SMART helicmild6 586 669 IPR001650 -
Stsc211807g00007 907 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 149 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211807g00007 Stsc-Chr211807 36024 42577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211807g00007 188 699 RAD5 or RAD16-like Gene Family AT1G02670 26.715 6.17e-35 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc211807g00007 SNF2_N 3.2e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211807g00007 K20098 - gmx:100781003 1364.75