Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211807g00001 ATGGCATTGCCTTCATCTTCTTCTTCCTCCTTTTCCACCTGTGTTCTATTCCTCCTTCTTCTAACTCTCTCTTGCTTCTTCAATAACCTTAATGCAAAGCATAATGTAGCCACTAATCACAACCGCCGCCACCACCACCCCCACCAGCACCACACCCAGAACACCCCATTGAACTCGAGGCTCGATCAAGCCTTTCTTGCGCTGCAAGCATGGAAGAATGTGATCTACTCTGACCCAAAAAACTTCACTGCCAATTGGGTAGGTCCTTCAGTTTGCAATTACACAGGTGTGTATTGTGCTCCATCTCAAGATAACTCTAAAGAGACAGTTGTAGCAGGAATTGACCTTAACCACGGTGACATAGCCGGATTCCTACCAACCGAATTAGGCCTCCTAGCAGACCTTGCTCTCCTCCATCTCAACAGCAATCGCTTTTGTGGCATCCTCCCAAGAACACTAAGCAACCTCACTCTGCTTCATGAGCTTGATCTTAGCAACAATAGATTTGTTGGACCTTTTCCTAATGTTGTCCTTTCCCTTCCTTCCTTAAGATACCTTGATATCCGGTTCAACGAATTCGAAGGGTCATTGCCTGTTGATCTCTTCAACAAAAGCTTTGATGCAATATTTCTCAACAACAACCGTCTCAGCAGTTCCATCCCCGGAAATTTCGGCCGAAGCTCGGCCTCTGTCCTGGTCTTTGCCAATAACAGATTTGGAGGCTGTCTTCCAGAAAGCATAGTAAACTTAGCTGAAACATTGGAAGAGCTTGTCATGATCAACACCAGTTTATCAGGTTGTTTGCCACAGCAAGTTGGATTTCTCTACAAATTGAGAGTGTTTGATGTTAGTTTCAACAAGATTGTTGGCCCCATACCTTATAGCCTTGCAGGGCTTTCTCATTTGGAGCAACTGAATTTGGCTCACAATATCATGACAGGAATAGTCCCTATGGGAGTTTGTGAGCTTCCAAACTTGGAGAATTTCACATTCTCATATAACTTCTTCTGTGAGGAAGAGGGTATTTGCCAGAACTTGACATCAAAAAGAATCGTCTTTGATGATCGACGCAACTGTTTGCCGGAGAAGCCGCTACAGAGGAGCAAGAAGGAGTGCAATGCTGTGAATGAAAACCCTGTTGACTGCATAGAGCTTTGTTGTATAACAGAAGGTGGTTTTGGAAACAATGTCACAACTTCAAGCTCAGTGCCAACAATGCCTATTTCTGCACCTCCTTTTATTGCACCAAGCCAGCCATGA 1260 0.4452 MALPSSSSSSFSTCVLFLLLLTLSCFFNNLNAKHNVATNHNRRHHHPHQHHTQNTPLNSRLDQAFLALQAWKNVIYSDPKNFTANWVGPSVCNYTGVYCAPSQDNSKETVVAGIDLNHGDIAGFLPTELGLLADLALLHLNSNRFCGILPRTLSNLTLLHELDLSNNRFVGPFPNVVLSLPSLRYLDIRFNEFEGSLPVDLFNKSFDAIFLNNNRLSSSIPGNFGRSSASVLVFANNRFGGCLPESIVNLAETLEELVMINTSLSGCLPQQVGFLYKLRVFDVSFNKIVGPIPYSLAGLSHLEQLNLAHNIMTGIVPMGVCELPNLENFTFSYNFFCEEEGICQNLTSKRIVFDDRRNCLPEKPLQRSKKECNAVNENPVDCIELCCITEGGFGNNVTTSSSVPTMPISAPPFIAPSQP 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211807g00001 419 SUPERFAMILY L domain-like 64 351 - -
Stsc211807g00001 419 Pfam Leucine rich repeat N-terminal domain 62 99 IPR013210 -
Stsc211807g00001 419 Gene3D Ribonuclease Inhibitor 63 226 IPR032675 -
Stsc211807g00001 419 Gene3D Ribonuclease Inhibitor 227 383 IPR032675 -
Stsc211807g00001 419 Pfam Leucine rich repeat 135 192 IPR001611 GO:0005515
Stsc211807g00001 419 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 19 395 - -
Stsc211807g00001 419 FunFam Leucine-rich repeat extensin-like protein 1 65 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211807g00001 Stsc-Chr211807 8851 10267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211807g00001 58 387 Leucine-rich Repeat extension Gene Families AT3G24480 56.798 4.70e-135 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211807g00001 - - aip:107632616 698.738