Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211805g00007 ATGGATGTGGACATATTCAAAACCTCTACTACTACTACTGCTAATGACAGCATGGACATGATGGCAATGATGATGCAGATGGAAAAGCTTCCTCCTCATGAATTATCTTCTCCTCAACCTCCTTTTTATAACACTACCTACCCACCAGATCAAACCGACTTCCATAATCATAATCATAATAATAATAATGTAGCACCTCAGCTTGAACCAAACTTGATGAATCCAAATCCAACACATCATCCCAGTTTCATCTTCCAACAGCAGCAACATTCCATGGCACCACCACCACCACCACCATCTGTTGATGATATCACTTGTTCTTTTCCCTCCTACCCTCCTCCTCCTCTGGATAACAGTAACAACAAGAAGAACTCGATGGCGGCGATGAGGGAGATGATATTCCGGGTGGCAGTGATGCAACCGGTTCACATAGACCCAGAGTCTATAAAAGCACCAAAGAGGAGGAACGTGAAGATCTCGAAGGACCCTCAGAGCGTGGCGGCGAGGCACAGGAGGGAGAGGATAAGCGAGAGGATAAGGATCCTTCAGAGATTAGTCCCCGGTGGAACTAAAATGGACACAGCTTCAATGTTAGATGAGGCCATTCACTATGTCAAGTTCTTGAAGAAGCAAGTGCAGACACTCGAACAAGCAGGAGGGGGGAATAGGCCAGCAAGTAATAATAATAACACTCATCTTGTTGCTGCTCCCTTCACGGGCTTCTCATCATCATCACCATCATCATCCATAAGTGCAAGCAGTTATTCTGCTTTGCTTAAAGGTTGTCACCAACCTTATCCTATGTTGATGGGTTCTAAGCAATTGCTCAGTTGA 834 0.4496 MDVDIFKTSTTTTANDSMDMMAMMMQMEKLPPHELSSPQPPFYNTTYPPDQTDFHNHNHNNNNVAPQLEPNLMNPNPTHHPSFIFQQQQHSMAPPPPPPSVDDITCSFPSYPPPPLDNSNNKKNSMAAMREMIFRVAVMQPVHIDPESIKAPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGGGNRPASNNNNTHLVAAPFTGFSSSSPSSSISASSYSALLKGCHQPYPMLMGSKQLLS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211805g00007 277 CDD bHLH_AtIND_like 160 216 - -
Stsc211805g00007 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Stsc211805g00007 277 FunFam BHLH transcription factor 162 226 - -
Stsc211805g00007 277 Coils Coil 198 218 - -
Stsc211805g00007 277 Pfam Helix-loop-helix DNA-binding domain 169 208 IPR011598 GO:0046983
Stsc211805g00007 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 217 IPR036638 GO:0046983
Stsc211805g00007 277 Gene3D - 158 228 IPR036638 GO:0046983
Stsc211805g00007 277 SMART finulus 165 214 IPR011598 GO:0046983
Stsc211805g00007 277 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 9 249 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211805g00007 Stsc-Chr211805 47106 47939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211805g00007 15 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 51.739 1.12e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc211805g00007 HLH 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211805g00007 - - gmx:100800816 218.009