LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211805g00005	ATGGAACAGCGAAAGCTTGTGGTTTTGGGTATTCCATGGGACGTGGATACAGAGGGCTTGAGGGAATACATGAGCAAGTACGGTGAATTGGAAGATTGTATTGTCATGAAGGAGCGGTCAACTGGACGATCTCGTGGATTTGGATATGTGACATTTGCTTCGGTGGATGATGCCAAGGATGTACTCTCAGGCGAACATGTTCTTGGCAACAGGATGCTAGAAGTTAAAGTGGCCACACCAAAGGAGGAGATGAGAGCACCAGCCAAAAAAGTAACCAGAATATTTGTAGCCAGGATTCCACCATCAGTAACAGAAGCATCTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACAGATCTGTATATGCCAAAGGATCAAGGATCAAAAATGCATCGTGGGATTGGTTTTATCACCTTTGCAAGTGCAGATTCTGTTGAGAGTTTGATGGCGGAAACCCATGAACTGGGAGGTTCTACCGTGGTGGTTGATCGAGCTACACCTAAGGATGATGACTTCAAGCCAGTAGGCAGAGTGCCACAGGGAGGGGGAGGGTATGGTGCATACAATGCTTATATTTCTGCAGCAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGATCATCCAGGCCCAGTCTATGGAAGGGGAGAACCATCTCGTCGAATTGGTAAAAAGATTTTTGTTGGCCGACTCCCCCCTGAGGCAACTTCCGAGGATCTTCGACAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTACGTTCCCAGGGATCCTAAGAGATCAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCAAGAAGGCCTCATGAAATTTGCGGACACCAGGTAGCATTAGATTCAGCCACACCTGTTGATGATGCAAGTCCCAGTGGGAACTTTATGATGAATGGCATGGGTTCTTTCGGGGGTTATGGAGGTCCTATGCGAACTTATGGGAGGATGTATGGTAGCCTAGACTTCGATGATTGGGGTTATGGAATTCCCAGTGGGAGGCCATCGAGAGCAGATTGGAGGTATAGGCCATACTAG	1086	0.4586	MEQRKLVVLGIPWDVDTEGLREYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKDVLSGEHVLGNRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEASFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFASADSVESLMAETHELGGSTVVVDRATPKDDDFKPVGRVPQGGGGYGAYNAYISAATRYAALGAPTLYDHPGPVYGRGEPSRRIGKKIFVGRLPPEATSEDLRQYFGRFGRILDVYVPRDPKRSGHRGFGFVTFAEDGVADRVSRRPHEICGHQVALDSATPVDDASPSGNFMMNGMGSFGGYGGPMRTYGRMYGSLDFDDWGYGIPSGRPSRADWRYRPY	361

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211805g00005	361	FunFam	heterogeneous nuclear ribonucleoprotein 1	84	176	-	-
	Stsc211805g00005	361	SUPERFAMILY	RNA-binding domain, RBD	226	326	IPR035979	GO:0003676
	Stsc211805g00005	361	Gene3D	-	1	83	IPR012677	-
	Stsc211805g00005	361	Gene3D	-	84	194	IPR012677	-
	Stsc211805g00005	361	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	226	302	IPR000504	GO:0003723
	Stsc211805g00005	361	FunFam	RNA-binding family protein isoform 1	223	306	-	-
	Stsc211805g00005	361	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	4	80	IPR000504	GO:0003723
	Stsc211805g00005	361	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	94	152	IPR000504	GO:0003723
	Stsc211805g00005	361	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	228	281	IPR000504	GO:0003723
	Stsc211805g00005	361	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	6	63	IPR000504	GO:0003723
	Stsc211805g00005	361	FunFam	heterogeneous nuclear ribonucleoprotein 1	2	83	-	-
	Stsc211805g00005	361	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	92	168	IPR000504	GO:0003723
	Stsc211805g00005	361	SMART	rrm1_1	93	164	IPR000504	GO:0003723
	Stsc211805g00005	361	SMART	rrm1_1	227	298	IPR000504	GO:0003723
	Stsc211805g00005	361	SMART	rrm1_1	5	76	IPR000504	GO:0003723
	Stsc211805g00005	361	SUPERFAMILY	RNA-binding domain, RBD	89	189	IPR035979	GO:0003676
	Stsc211805g00005	361	Gene3D	-	223	306	IPR012677	-
	Stsc211805g00005	361	PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	223	333	-	-
	Stsc211805g00005	361	SUPERFAMILY	RNA-binding domain, RBD	3	86	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211805g00005	Stsc-Chr211805	33121	37206	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211805g00005	5	86	Eukaryotic Initiation Factors Gene Family	AT2G23350	35.714	3.56e-06	47.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211805g00005	K14411		-	gmx:100795240	654.825