LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211802g00002	ATGCTGACAGGGCAGATACCCAGGGGGATATTCCAGCTCAGCAATCTCAACAAACTTCTGTTACTCTCTAACAACCTTTCCGGAATCATTCCTCCTGAGATTGGTAACTGCTCCTCACTGATACGCTTCAGAGCGAGTAATAACAAGATTAGTGGTAGCATTCCGCCTCAGATTGGCAACTTGAAGAATCTCAACTTCTTGGACCTTGCCAATAACCGTATCTCGGGTGTTATCCCGGAGGAAATCTCTGGCAGTCGGAATCTTACTTTCTTGGACTTACATTCTAATTTGATCGCCGGAAACTTGCCGGAGAGTCTCAGCGAGCTTGTTTCGCTTCAGTTTCTAGATGTTTCTGATAACGTCATCGGAGGGACGTTGAGTCCTTCTCTTGGTTCGCTTGGTGCGTTGACGAAGCTGGTGTTAGGGAGGAATCGGATCTCCGGTTCAATTCCGAGTCAACTCGGTTCTTGCTCAAAGCTTCAGTTGCTGGACCTTGGCAGCAACCAGCTCGACAGAGAGATCCCTGGAAGTCTTGGAAACATTCCGGCTTTGGAAATAGCCATGAATCTAAGCCTCAACCAACTCTCCGGCGACATTCCAAGGGAGTTCTCGAACTTGGCGAAGCTCGGAGTCTTGGACATTTCTCACAACGCTATCACCGGAAACCTCCAATATCTCGCGGGTTTGCAAAATCTCGTGGTGCTTAACGTCTCGCACAACAGATTCTCAGGGCGCGTCCCGGACACTCCGTTCTTCACGAAGCTTCCAATTAGCGTGCTAGAAGGGAACCCCGCGCTGTGCTTCGCCGGAAACCAGTGCTCCGGTGACGGCAGCGGTGCCGGAAAGTCATCACGTCGGGCAAGGGAGGCGCGCGTAGCGATGGTGGTCCTGTTGAGCATAGCATGCGCTCTGCTCATGGCGGCGCTATACGTCGTCGTCTCTGCCAAACGACGGGGGGACCGTGAAAACGACGTGGAAATGGATGGAAAGGATAGCGACGGCACAGACATGGCCCCACCATGGGAAGTAACACTTTACCAGAAACTCGATTTGTCGATTTCTGACGTGGCAAAATGCCTCTCCTCCAGCAACGTGATCGGCCACGGCCGATCCGGCGTCGTTTACAAGGTGAACATGCCTGGAACGGGGCTGACCATCGCCGTGAAGAAGTTTAAGGCGTCGGAGAAACTATCGGCGTCGGCGTTCTCGTCGGAGATTGCCACACTGGCAAGGATCCGCCACCGTAACATAGTGCGGTTACTTGGTTGGGGCGCGAACCGTAGAACAAAGTTACTGTTTTACGATTATTTACCTAACGGTAACTTAGACACGCTGTTGCACGAGGGGTGCACAGGGTTAATAGAGTGGGAGACGCGGCTCAAGATAGCATTGGGCGTGGCTGAAGGCCTAGCTTACTTGCACCACGATTGCGTCCCTGCTATCTTGCACCGTGACGTTAAAGCCCTCAACATTCTGTTAGGCGACAGGTATGAACCCTGTTTGGCTGATTTTNNNNNNNNNNGAAGAAGATCATCCTTCTTTTTCCGTTAA	1551	0.5158	MLTGQIPRGIFQLSNLNKLLLLSNNLSGIIPPEIGNCSSLIRFRASNNKISGSIPPQIGNLKNLNFLDLANNRISGVIPEEISGSRNLTFLDLHSNLIAGNLPESLSELVSLQFLDVSDNVIGGTLSPSLGSLGALTKLVLGRNRISGSIPSQLGSCSKLQLLDLGSNQLDREIPGSLGNIPALEIAMNLSLNQLSGDIPREFSNLAKLGVLDISHNAITGNLQYLAGLQNLVVLNVSHNRFSGRVPDTPFFTKLPISVLEGNPALCFAGNQCSGDGSGAGKSSRRAREARVAMVVLLSIACALLMAALYVVVSAKRRGDRENDVEMDGKDSDGTDMAPPWEVTLYQKLDLSISDVAKCLSSSNVIGHGRSGVVYKVNMPGTGLTIAVKKFKASEKLSASAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLDTLLHEGCTGLIEWETRLKIALGVAEGLAYLHHDCVPAILHRDVKALNILLGDRYEPCLADFXXXXRRSSFFFR	516

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211802g00002	516	FunFam	LRR receptor-like serine/threonine-protein kinase	349	436	-	-
	Stsc211802g00002	516	Gene3D	Ribonuclease Inhibitor	1	274	IPR032675	-
	Stsc211802g00002	516	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	481	493	IPR008271	GO:0004672\|GO:0006468
	Stsc211802g00002	516	SMART	LRR_typ_2	61	85	IPR003591	-
	Stsc211802g00002	516	SMART	LRR_typ_2	229	262	IPR003591	-
	Stsc211802g00002	516	SMART	LRR_typ_2	13	37	IPR003591	-
	Stsc211802g00002	516	SMART	LRR_typ_2	158	180	IPR003591	-
	Stsc211802g00002	516	SMART	LRR_typ_2	133	157	IPR003591	-
	Stsc211802g00002	516	SUPERFAMILY	L domain-like	6	268	-	-
	Stsc211802g00002	516	ProSiteProfiles	Protein kinase domain profile.	360	516	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc211802g00002	516	SUPERFAMILY	Protein kinase-like (PK-like)	349	504	IPR011009	-
	Stsc211802g00002	516	SMART	serkin_6	360	514	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc211802g00002	516	Gene3D	Transferase(Phosphotransferase) domain 1	351	512	-	-
	Stsc211802g00002	516	PANTHER	LEUCINE RICH REPEAT KINASE 2	2	505	-	-
	Stsc211802g00002	516	ProSitePatterns	Protein kinases ATP-binding region signature.	366	390	IPR017441	GO:0005524
	Stsc211802g00002	516	Pfam	Protein kinase domain	363	504	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc211802g00002	516	Pfam	Leucine rich repeat	63	122	IPR001611	GO:0005515
	Stsc211802g00002	516	FunFam	LRR receptor-like serine/threonine-protein kinase RCH1	1	277	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211802g00002	Stsc-Chr211802	36346	40431	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211802g00002	2	504	Receptor kinase-like Gene Family	AT5G56040	52.871	7.96e-170	506

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Stsc211802g00002		Pkinase	2.3e-24	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211802g00002	-		-	adu:107493731	909.442