Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211802g00002 ATGCTGACAGGGCAGATACCCAGGGGGATATTCCAGCTCAGCAATCTCAACAAACTTCTGTTACTCTCTAACAACCTTTCCGGAATCATTCCTCCTGAGATTGGTAACTGCTCCTCACTGATACGCTTCAGAGCGAGTAATAACAAGATTAGTGGTAGCATTCCGCCTCAGATTGGCAACTTGAAGAATCTCAACTTCTTGGACCTTGCCAATAACCGTATCTCGGGTGTTATCCCGGAGGAAATCTCTGGCAGTCGGAATCTTACTTTCTTGGACTTACATTCTAATTTGATCGCCGGAAACTTGCCGGAGAGTCTCAGCGAGCTTGTTTCGCTTCAGTTTCTAGATGTTTCTGATAACGTCATCGGAGGGACGTTGAGTCCTTCTCTTGGTTCGCTTGGTGCGTTGACGAAGCTGGTGTTAGGGAGGAATCGGATCTCCGGTTCAATTCCGAGTCAACTCGGTTCTTGCTCAAAGCTTCAGTTGCTGGACCTTGGCAGCAACCAGCTCGACAGAGAGATCCCTGGAAGTCTTGGAAACATTCCGGCTTTGGAAATAGCCATGAATCTAAGCCTCAACCAACTCTCCGGCGACATTCCAAGGGAGTTCTCGAACTTGGCGAAGCTCGGAGTCTTGGACATTTCTCACAACGCTATCACCGGAAACCTCCAATATCTCGCGGGTTTGCAAAATCTCGTGGTGCTTAACGTCTCGCACAACAGATTCTCAGGGCGCGTCCCGGACACTCCGTTCTTCACGAAGCTTCCAATTAGCGTGCTAGAAGGGAACCCCGCGCTGTGCTTCGCCGGAAACCAGTGCTCCGGTGACGGCAGCGGTGCCGGAAAGTCATCACGTCGGGCAAGGGAGGCGCGCGTAGCGATGGTGGTCCTGTTGAGCATAGCATGCGCTCTGCTCATGGCGGCGCTATACGTCGTCGTCTCTGCCAAACGACGGGGGGACCGTGAAAACGACGTGGAAATGGATGGAAAGGATAGCGACGGCACAGACATGGCCCCACCATGGGAAGTAACACTTTACCAGAAACTCGATTTGTCGATTTCTGACGTGGCAAAATGCCTCTCCTCCAGCAACGTGATCGGCCACGGCCGATCCGGCGTCGTTTACAAGGTGAACATGCCTGGAACGGGGCTGACCATCGCCGTGAAGAAGTTTAAGGCGTCGGAGAAACTATCGGCGTCGGCGTTCTCGTCGGAGATTGCCACACTGGCAAGGATCCGCCACCGTAACATAGTGCGGTTACTTGGTTGGGGCGCGAACCGTAGAACAAAGTTACTGTTTTACGATTATTTACCTAACGGTAACTTAGACACGCTGTTGCACGAGGGGTGCACAGGGTTAATAGAGTGGGAGACGCGGCTCAAGATAGCATTGGGCGTGGCTGAAGGCCTAGCTTACTTGCACCACGATTGCGTCCCTGCTATCTTGCACCGTGACGTTAAAGCCCTCAACATTCTGTTAGGCGACAGGTATGAACCCTGTTTGGCTGATTTTNNNNNNNNNNGAAGAAGATCATCCTTCTTTTTCCGTTAA 1551 0.5158 MLTGQIPRGIFQLSNLNKLLLLSNNLSGIIPPEIGNCSSLIRFRASNNKISGSIPPQIGNLKNLNFLDLANNRISGVIPEEISGSRNLTFLDLHSNLIAGNLPESLSELVSLQFLDVSDNVIGGTLSPSLGSLGALTKLVLGRNRISGSIPSQLGSCSKLQLLDLGSNQLDREIPGSLGNIPALEIAMNLSLNQLSGDIPREFSNLAKLGVLDISHNAITGNLQYLAGLQNLVVLNVSHNRFSGRVPDTPFFTKLPISVLEGNPALCFAGNQCSGDGSGAGKSSRRAREARVAMVVLLSIACALLMAALYVVVSAKRRGDRENDVEMDGKDSDGTDMAPPWEVTLYQKLDLSISDVAKCLSSSNVIGHGRSGVVYKVNMPGTGLTIAVKKFKASEKLSASAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLDTLLHEGCTGLIEWETRLKIALGVAEGLAYLHHDCVPAILHRDVKALNILLGDRYEPCLADFXXXXRRSSFFFR 516
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc211802g00002 516 FunFam LRR receptor-like serine/threonine-protein kinase 349 436 - -
Stsc211802g00002 516 Gene3D Ribonuclease Inhibitor 1 274 IPR032675 -
Stsc211802g00002 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
Stsc211802g00002 516 SMART LRR_typ_2 61 85 IPR003591 -
Stsc211802g00002 516 SMART LRR_typ_2 229 262 IPR003591 -
Stsc211802g00002 516 SMART LRR_typ_2 13 37 IPR003591 -
Stsc211802g00002 516 SMART LRR_typ_2 158 180 IPR003591 -
Stsc211802g00002 516 SMART LRR_typ_2 133 157 IPR003591 -
Stsc211802g00002 516 SUPERFAMILY L domain-like 6 268 - -
Stsc211802g00002 516 ProSiteProfiles Protein kinase domain profile. 360 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211802g00002 516 SUPERFAMILY Protein kinase-like (PK-like) 349 504 IPR011009 -
Stsc211802g00002 516 SMART serkin_6 360 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211802g00002 516 Gene3D Transferase(Phosphotransferase) domain 1 351 512 - -
Stsc211802g00002 516 PANTHER LEUCINE RICH REPEAT KINASE 2 2 505 - -
Stsc211802g00002 516 ProSitePatterns Protein kinases ATP-binding region signature. 366 390 IPR017441 GO:0005524
Stsc211802g00002 516 Pfam Protein kinase domain 363 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211802g00002 516 Pfam Leucine rich repeat 63 122 IPR001611 GO:0005515
Stsc211802g00002 516 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 1 277 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc211802g00002 Stsc-Chr211802 36346 40431 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211802g00002 2 504 Receptor kinase-like Gene Family AT5G56040 52.871 7.96e-170 506
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc211802g00002 Pkinase 2.3e-24 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211802g00002 - - adu:107493731 909.442