Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211802g00001 ATGGGTTTCTATGCTGAGGACTCATCATCAGCATATGGTTTGAAAATAGGTCAAGCCATATATGAAGCAGCTCTAATCATTGCAGTTGTGAGATGGGTCTTGTGCTTGGTTTCCAGGTTCATCAAAGATAGAAGCACGACACCTCCTTCTTCGTCTTCTTCTTGTACCCTTGTGTTGACCACGTTCCGTGAGATAATGGAGAGGCTTCCGGAGACAGAAGAAGATACATCTTGTGCGGTGTGCTTGAACCAGATGAAGATGGAAGATGAGGTTAGGGAACTCGTGAACTGCTACCATGTCTTCCACAGGGAATGCATAGACAGATGGTTGAACCATGATGATAACAACCATAACCCTACTTGCCCTCTTTGTAGAGCACCTTTGCTCACTCTTAGTGAGAGCTGTCATACATCTTCAGAGAGCTCTTATGGTTGTGTGCCTCCATCCCCTCAACCCAGTTGGGCTGTGGAGAGACTTCTCTACCTCTTCGGAGATGATCTCCTTCCATGTTAA 513 0.46 MGFYAEDSSSAYGLKIGQAIYEAALIIAVVRWVLCLVSRFIKDRSTTPPSSSSSCTLVLTTFREIMERLPETEEDTSCAVCLNQMKMEDEVRELVNCYHVFHRECIDRWLNHDDNNHNPTCPLCRAPLLTLSESCHTSSESSYGCVPPSPQPSWAVERLLYLFGDDLLPC 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211802g00001 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 25 168 - -
Stsc211802g00001 170 SMART ringv_2 77 125 IPR011016 GO:0008270
Stsc211802g00001 170 Pfam Ring finger domain 77 125 IPR001841 -
Stsc211802g00001 170 SUPERFAMILY RING/U-box 72 131 - -
Stsc211802g00001 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 133 IPR013083 -
Stsc211802g00001 170 ProSiteProfiles Zinc finger RING-type profile. 78 125 IPR001841 -
Stsc211802g00001 170 SMART ring_2 78 124 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211802g00001 Stsc-Chr211802 6447 6959 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211802g00001 1 167 C3H Transcription Factor Family AT5G20885 46.237 1.03e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211802g00001 K16281 - gmx:111138523 219.935