Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211794g00006 ATGGCGTCTTCTTCTTCTTCTTCTTGTGGCTCTCGCGAGGGACACTACAGAGGGGTCAGGAAGAGACCATGGGGTCGCTATGCCGCCGAGATACGCGACCCTTGGAAGAAAACTAGGGTTTGGCTCGGCACCTTCGACACCCCCGAGGAGGCAGCCATGGCCTACGACGGCGCCGCTCGTTCCCTCCGTGGACCAAAGGCCAAGACCAACTTCCCCCCTGCGCCCCCGCTTCCCACCGCCCTCGATCTCACCATAGGAACCTCCTGCTGGCCCCCCGTTCCATCACGCCGTGTTGCGCTCCGTGAGTTTCTCCAAACCAGCATCCTCCGTGATCATCGCCCACCTCCTCCCCCTCCTCCTCCTTCTCAGACACTGCCTGCGGTGGCTGTGGGTGACGGCGGATCCCAGCATGTTCTGGAGAGTTCTGAGACGACATCGTTTTGGGGAGTGGTTGGGCGCGGTCTTCCCGTGGATCTGAATGAGCCTCCACCGCTGTGGCTGTGA 504 0.619 MASSSSSSCGSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAAMAYDGAARSLRGPKAKTNFPPAPPLPTALDLTIGTSCWPPVPSRRVALREFLQTSILRDHRPPPPPPPPSQTLPAVAVGDGGSQHVLESSETTSFWGVVGRGLPVDLNEPPPLWL 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211794g00006 167 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 110 - -
Stsc211794g00006 167 FunFam Ethylene-responsive transcription factor 2 15 73 - -
Stsc211794g00006 167 CDD AP2 15 71 IPR001471 GO:0003700|GO:0006355
Stsc211794g00006 167 MobiDBLite consensus disorder prediction 109 134 - -
Stsc211794g00006 167 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Stsc211794g00006 167 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Stsc211794g00006 167 MobiDBLite consensus disorder prediction 111 125 - -
Stsc211794g00006 167 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Stsc211794g00006 167 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Stsc211794g00006 167 SUPERFAMILY DNA-binding domain 15 72 IPR016177 GO:0003677
Stsc211794g00006 167 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Stsc211794g00006 167 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211794g00006 Stsc-Chr211794 27290 28166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211794g00006 5 167 AP2-EREBP Transcription Factor Family AT1G28360 47.959 1.06e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc211794g00006 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211794g00006 - - gmx:100798369 211.846