Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211794g00001 ATGCCAGCACAGAAGCGGTTGCATGGGTCTCTGGAGGAGAACGAGGATGCTCTGCGCGCCAACACCGTCGAGAAGCAAGAAGATGAAGTCGAATCCGATCTAAGCAACTCTTTGAGCAACGGCGACAAGGAAGAATATGTGGTTATAAAATTGGCAGATGTACGCAAGGAAGTTCAGTGCCCCATCTGCCTAGGCATCATTCGAAAAACAAGAACTGTAATGGAATGCCTGCATCGCTTCTGCAGAGAGTGCATAGACAAATCTATGCGTCTTGGTAACAATGAATGCCCCGCCTGCCGTACACATTGTGCTAGCCGACGCTCACTCAGGGATGACCCAAATTATGATTCCTTGATTGCTGCTCTCTATCCAGATATTGATAAGTATGAGGAGGAGGAATTGGCATTACACGAAGATGAGGTAGCTCACAATAAACAGAAGATTCAAGCTTCCATTGCTCAGACTCTTAGACGACAGACAGAAGCATTGGGTAAGAAACGGCATGCCAAAGCAGCAGCAGTGGCTTTCGTAAGGAGGTCACAAGGTAACTATCGAACCTCACATACGAGGAGAAGAAAACGCTTTAGAAATGCAGGTGAACAAGAAGTATCCGATGACAATGAGGATATGAATGATTATGAAGGGGGGAAGGGCTCATCTTCGGGTGATGAGCAGACGGAAACCAAACAAAAAAGATGCAAAAGAGGGGGAGAAACACAGTTTCCTCAACATTCTGCCTCTGCTGACGCAGATGTAGCTGGAGAGGAAAATACTCCTGAAGGGGACAGAGATGTCATAACTTCATCTGGTAGTACACTTGCCTGGGGGAAGAATGGTCAGCGGAGTCACACACGAGGAAATGGCAAGAATTCTGCCAATGGGAAAAATTCCAAAAACAGTCGCATCTCCAAGTTGGTTGATTATCTTCAGAGCTCTGAAGAAAATTATGACAAGTCGGATATCTTTCTTGTGGTTGTCTCTCTGGATGAAGATAGAATACCAAGTTTGCAGGAGCCATACCTTCAGTGCAAGCCTACGTTCTCAGTCAGTTCACTGAGCAAGTATGTTGCAGTTAAGACTGGACAGCAGCCTGATGATGTCGAGTTATTCGTGGTAGAAGAGCCTGGAGAGCCCCAAGTTAACATTATAAGAGGTGAAAGAACAGTTGATCCAGAGAAAGATAAGGTACGTGCTCTAGGACAAGAAGAAACGATGGCTGAACTGACAAGTTGTAACCTCATCCGTGGTCATCTGCTCCTGGCATATAAGAGGAAGTCTTGGAATTCAGTTAGCTCGAACTGA 1302 0.4585 MPAQKRLHGSLEENEDALRANTVEKQEDEVESDLSNSLSNGDKEEYVVIKLADVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDSLIAALYPDIDKYEEEELALHEDEVAHNKQKIQASIAQTLRRQTEALGKKRHAKAAAVAFVRRSQGNYRTSHTRRRKRFRNAGEQEVSDDNEDMNDYEGGKGSSSGDEQTETKQKRCKRGGETQFPQHSASADADVAGEENTPEGDRDVITSSGSTLAWGKNGQRSHTRGNGKNSANGKNSKNSRISKLVDYLQSSEENYDKSDIFLVVVSLDEDRIPSLQEPYLQCKPTFSVSSLSKYVAVKTGQQPDDVELFVVEEPGEPQVNIIRGERTVDPEKDKVRALGQEETMAELTSCNLIRGHLLLAYKRKSWNSVSSN 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211794g00001 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 129 IPR013083 -
Stsc211794g00001 433 CDD RING-HC_RING1-like 57 122 - -
Stsc211794g00001 433 SMART ring_2 60 99 IPR001841 -
Stsc211794g00001 433 MobiDBLite consensus disorder prediction 175 299 - -
Stsc211794g00001 433 ProSiteProfiles Zinc finger RING-type profile. 60 100 IPR001841 -
Stsc211794g00001 433 PANTHER OS11G0578200 PROTEIN 16 427 IPR044592 -
Stsc211794g00001 433 MobiDBLite consensus disorder prediction 8 32 - -
Stsc211794g00001 433 MobiDBLite consensus disorder prediction 1 38 - -
Stsc211794g00001 433 MobiDBLite consensus disorder prediction 224 238 - -
Stsc211794g00001 433 SUPERFAMILY RING/U-box 46 131 - -
Stsc211794g00001 433 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
Stsc211794g00001 433 MobiDBLite consensus disorder prediction 263 299 - -
Stsc211794g00001 433 Pfam Zinc finger, C3HC4 type (RING finger) 59 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211794g00001 Stsc-Chr211794 4224 8937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211794g00001 51 195 C3H Transcription Factor Family AT2G30580 27.097 3.82e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211794g00001 K10695 - qsa:O6P43_031861 494.582