Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211790g00004 ATGGCTGTAACCGATCGGTGTTTCGTGGAATGGAAAGAGCAGTTTGTTTCCCAAGAGCGTGGCAACCGTGTTGTCCACTATTACCTGAAGGATTCTGATGGGGAATCCATACTTGCTGTTGTGGGCACTGAGAGGAGTGTTAGACACATGTTCTATGTTGTCGCCGATGAGTTTTTGGAAATTTGTGGGAAGGAAGGTTCTGTTCCCCCCGGTTTCAAATGGAGATCTAGAAGAGAGGTGGTTGATTGGTTGACGTCGACACTTTCAAAGCAGCATCTTCAGGGAGATAGAAGTGGTTCACCTAGTCATTCTTCAGGACAAGCTTATGAAACCACAAATGGTAGTGTCAATGAAATTACTGGTCTTCCTGCACCAATAGCGAATGGCAAGGGATTTCTAACCCGAAATTCCAAATTATCCAAGTCGGACATTGTTTGGTCTGGAGTGGCATGGACATGTGGCAAGCAGCTTAAGCATTATCATGCTTTTTGCAGGAATGGCATCAAAATAATTGTTCAATCCTTTGTTTATGTCATGGGCAAGGGAGAGAATCATTACGTTGCTTATTTAGAGGATATGTATGAAGACAGGAGGGGGCAGAAAAAGGTGAAAGTGAGGTGGTTTCACCATAATCAGGAAGTTAAGGGTGTGATTCCGGTACGGAATCCACATCCTCGGGAAGTTTTCATCACACCATACTCTCAAGTCATTAGTGCAGAGTGTGTTGATGGTCCCACCACAGTCTTAAGTCGTGAACATTATGAAAAATGCATGCCTTGCTTTTCACCGACTTCATTGGATAGAATACATATGTGCTTTAGGCAATTTAGAAGCAACAAAGTCAAGCCCTTTGACTTGAGTAAACTGCGTGGCTACTATGATCAGCCAATTCTTTCTTGCTTGCGATTCGATTCTATGCAGAACCCCAAGGGAAATATCCTTGCAGGAGGAGACGAAGAGTTGAGTGCAGGTGAAAATTTAAAGCCCAGAGCCAAGAGAAGGGACAGGGGAACTCCTCAGTCTTTGATGGGCCGCCAGGGAGTTAGGAAGTTAGTTAGGAGTCAGCAAATGATGGTATACAAAAACTCGCAAGGTGTAAATAGTTCTAGGACAGATAGGAGATTGTTTTCTCGGAAGGAAGTTGAATCTCAACCTTGGTATAACGTCATGTACAAGATTGACGACAAGATAGAGGTTCTCTGTCAGGATAGTGGTATCAGAGGCTGCTGGTTCAGGTGTACGGTTGTGCAGGTATCTCGGAAACAGATGAAAGTCCAATACGATGATATTCAGGATGAAGATGGAAGTGGAAATCTTGAGGAGTGGATTCCTGCTTTCAAGTTGGCCATGCCTGATAAGCTTGGTATAAGACATCCTGGCCGATCAACAATTAGGCCAGCTCCTCCAACCTCCGACGACCAAGAATTGGTTATTGGGGTTGGAACTGCAGTTGATGCGTGGTGGAGTGACGGCTGGTGGGAGGGTGTTGTAACCGGAACTGATAACTATATCGATGATAATGTGCAAGTGTACTTTCCTGGTGAAGGCTTGCTAATGAAAGTACACCAGAAAGATCTAAGAATATCTAGAGATTGGTCAGGGGACAGGTGGATTGATATTAAGCCGAAGTTTGATGTAACCTCAACTATATTCGCAGTTAACGGAGTTAAGACGAAGCCTTCCACGTCCCCGTCCCCGTCCATAGCTAAAGACGCGGACTCTGTTGGTGCTGCAAATTCATGTGACGAAGCTCTGGCAAGTGGCGAGCCTATTAATAATGAACCTGATTTTGCTGAAGAGAAGGTTGTGTGTCACGAGGGTGTTGCTGAAGATGGAAATAACAATGATGATGATGATAATAATAGTAATCTTCCATCAGAAAAGGATACTGAAGCTGATAACAATGAGATTGAGATGAATAGTATTGATAATGAAGATAATGGTGATGATTCTAATAAGGAAAGTAATGACAATGTTGATAACAAGGACGGCGAAAACCGTAATAAGGATACGGAGGCGTTTGGGACTTCCGTCGAGGACTGTAAAGCCGGAGAACCCGCTGCGGAAATGGCTGTATAA 2079 0.4406 MAVTDRCFVEWKEQFVSQERGNRVVHYYLKDSDGESILAVVGTERSVRHMFYVVADEFLEICGKEGSVPPGFKWRSRREVVDWLTSTLSKQHLQGDRSGSPSHSSGQAYETTNGSVNEITGLPAPIANGKGFLTRNSKLSKSDIVWSGVAWTCGKQLKHYHAFCRNGIKIIVQSFVYVMGKGENHYVAYLEDMYEDRRGQKKVKVRWFHHNQEVKGVIPVRNPHPREVFITPYSQVISAECVDGPTTVLSREHYEKCMPCFSPTSLDRIHMCFRQFRSNKVKPFDLSKLRGYYDQPILSCLRFDSMQNPKGNILAGGDEELSAGENLKPRAKRRDRGTPQSLMGRQGVRKLVRSQQMMVYKNSQGVNSSRTDRRLFSRKEVESQPWYNVMYKIDDKIEVLCQDSGIRGCWFRCTVVQVSRKQMKVQYDDIQDEDGSGNLEEWIPAFKLAMPDKLGIRHPGRSTIRPAPPTSDDQELVIGVGTAVDAWWSDGWWEGVVTGTDNYIDDNVQVYFPGEGLLMKVHQKDLRISRDWSGDRWIDIKPKFDVTSTIFAVNGVKTKPSTSPSPSIAKDADSVGAANSCDEALASGEPINNEPDFAEEKVVCHEGVAEDGNNNDDDDNNSNLPSEKDTEADNNEIEMNSIDNEDNGDDSNKESNDNVDNKDGENRNKDTEAFGTSVEDCKAGEPAAEMAV 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211790g00004 692 ProSiteProfiles BAH domain profile. 168 287 IPR001025 GO:0003682
Stsc211790g00004 692 CDD Tudor_Agenet_AtDUF_rpt1_3 391 469 - -
Stsc211790g00004 692 MobiDBLite consensus disorder prediction 91 111 - -
Stsc211790g00004 692 SMART agenet_At_2 476 534 IPR014002 -
Stsc211790g00004 692 SMART agenet_At_2 389 454 IPR014002 -
Stsc211790g00004 692 MobiDBLite consensus disorder prediction 646 676 - -
Stsc211790g00004 692 Pfam BAH domain 170 276 IPR001025 GO:0003682
Stsc211790g00004 692 Pfam Agenet domain 394 469 IPR008395 -
Stsc211790g00004 692 SMART BAH_4 168 287 IPR001025 GO:0003682
Stsc211790g00004 692 MobiDBLite consensus disorder prediction 324 345 - -
Stsc211790g00004 692 Gene3D - 135 288 IPR043151 -
Stsc211790g00004 692 MobiDBLite consensus disorder prediction 608 692 - -
Stsc211790g00004 692 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 390 655 - -
Stsc211790g00004 692 CDD BAH_plant_1 163 292 - -
Stsc211790g00004 692 MobiDBLite consensus disorder prediction 324 339 - -
Stsc211790g00004 692 MobiDBLite consensus disorder prediction 621 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211790g00004 Stsc-Chr211790 23947 29273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211790g00004 403 533 PHD Transcription Factor Family AT5G58610 32.090 2.79e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211790g00004 - - gmx:100306240 953.355