Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211789g00006 ATGGAAATGAAGGGGGAGAATCACAAAGGGAAGGCATTGAATCTGCTTCGAAGCAGAGTGTGTGACCCCAAATTCGCGTTCAAGGCACTTTATGATTCTCCAGAGAGCAACTATAGCAAGCTTAAATTCATGATTTCTAGTTCCGTCACTGAGGCTTGTAACAACTCCATTCTCCTTCTCGGTCCTCGCGGCTCCGGCAAGATTTCCGTGTTGGAGCTTGTCATTCGGGATTTGCTGGATGAATATCCCGACTCAATTTCAATGATCAGGTTAAGTGGACTTCTACACAGTGATGACATCTCTGCGTTCAAGGAAATAGCTAGGCAGTTATGTATGGAGCATCAGTTGCTATTCTCAAAATCGGCATCGTTTGATGACAACTCCCAATTTATGGTAGCCATGCTAAAGGAATGTGGATTAGCACATAAAACAGTCATTTTTGTTTTGGATGAGTTTGACCTCTTTGCTCAGGGTAAACAGCGGTTACTTTACAGTCTCTTAGATGCAATGCAATCAGTAACATCACAGGCTGTTGTACTTGGCATTAGCTGTCGGCTGGATGCTGATCAGTTGTTGGAGAAAAGAGTACGTTCTCGATTGCTGGTGCACATGCTTACATTACCAGTAGATTCAAGCTTCCCTCGTGATTATGCTATTGAATTTAATAGAAGGGTCCAAAATATTGTAGAAGACAAAAGGTTCAAAGAAACCTTCAATGCATATTTAAATTTTGACTCCTCTGTTAAGCATTTGCTAAAGTTCCTATTCTGTGCTATCTCTCATATGGATTCGAAGACTGGGTTTCTGTCCCATGAGAACTTCAAAACCGCATTTTCAAGTATTTATAGGCAACCAAAACTGGAATGTTTAAGAAATTGCTCCATTTTAGAACTTTACATTTTGGTTTGCATGAAGAGGTTGGAAGTGAAAGAGAAAAGCTTCTGCAACTTCAATTCTGTGATGAAAGAGTATAAAAGTATACATGATTCCTTCCAGACATCTGATTACTATGATCGAAATGTCTGCTTAAGGGCATTTGAACACCTTATAAATCGGGAACTAATATGCTTCACGGACAATAGAGGGCACAGTTTGTCCATTGAATATCGTCCTGTAAAGCTTTTAATCTCATCTGCTGAACTGAATCAAGGACTAAAAGCATATCATTCATGCCCCGCTATCCTTCAAAAGCTAATGGATCGTGAAGGCTAG 1212 0.4026 MEMKGENHKGKALNLLRSRVCDPKFAFKALYDSPESNYSKLKFMISSSVTEACNNSILLLGPRGSGKISVLELVIRDLLDEYPDSISMIRLSGLLHSDDISAFKEIARQLCMEHQLLFSKSASFDDNSQFMVAMLKECGLAHKTVIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVLGISCRLDADQLLEKRVRSRLLVHMLTLPVDSSFPRDYAIEFNRRVQNIVEDKRFKETFNAYLNFDSSVKHLLKFLFCAISHMDSKTGFLSHENFKTAFSSIYRQPKLECLRNCSILELYILVCMKRLEVKEKSFCNFNSVMKEYKSIHDSFQTSDYYDRNVCLRAFEHLINRELICFTDNRGHSLSIEYRPVKLLISSAELNQGLKAYHSCPAILQKLMDREG 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211789g00006 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 211 IPR027417 -
Stsc211789g00006 403 Pfam AAA ATPase domain 39 172 IPR041664 -
Stsc211789g00006 403 FunFam Origin of replication complex subunit 4 35 208 - -
Stsc211789g00006 403 PIRSF ORC4 199 403 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
Stsc211789g00006 403 PIRSF ORC4 2 201 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
Stsc211789g00006 403 Pfam Origin recognition complex (ORC) subunit 4 C-terminus 200 383 IPR032705 -
Stsc211789g00006 403 Gene3D - 34 208 IPR027417 -
Stsc211789g00006 403 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 4 10 402 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211789g00006 Stsc-Chr211789 15833 19208 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211789g00006 3 400 Core DNA Replication Machinery Family AT2G01120 62.411 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211789g00006 K02606 - gmx:100800582 640.958