Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211786g00006 ATGAAAGAAGCTGGAAGGCCTAATGTTGTGGACTTTTTTCCAATGCTTCGCAAGCTTGATCCACAAGGTGCACGTGCAAGGATGAACAATTACTTTGGGAAGTTGATTGATTTTTTTGATGGTCTTGTTGAAGAAAGGTTAGAAAGGGAAACGAAATTATCTACTGATGTGTTGGATTCTTTGTTGGAATTTATGATGGAAGACAACTCCCAAGTTACTCGTCCTCATCTATTGCATTTATTTTTGGATTTATTTGTAGCTGGAACAGACACAACATCAAGTACAATAGAATGGGCAATGTCAGAATTGTTACGCAACCCTGAAAAACTAGAACAAGTAAGAAAAGAGCTTCAACAAGTTATTGGCAAAGATGAACAAGAACAAATTGAAGAATCATATATCACAAAACTTCCTTACCTAAGAGCAGTGGTGAAAGAAACTTTTAGGTTGCACCCACCAATCCCACTTTTAGTGCCACACAAATCAGAAGACAATGTTGAAATATGTGGTTTCATGGTACCTAAAGATGCACAAGTTCTTGTTAATGTTTGGGCTATGGGAAGAGATTCAAATATTTGGAGAAACCCAGATGAATTTTTACCTGAAAGATTCTTAGAAAATGATGTTGATTTTAAGGGCCAAGATTTTGAGTTAATTCCGTTTGGTGCTGGAAGAAGAATTTGTCCTGGATTACCATTGGCTTCTAGAACCATCCACATTGTTTTAGCATCTCTTCTATATAACTATGATTGGAAGCTTGCAAATGGAAAAAAGAAAGAGGACATTGACATGTCTGAGACATACGGGATTACCCTACATAAGACTCATCCTCTCCATGTTATATCAATCCAAGCATAA 858 0.3671 MKEAGRPNVVDFFPMLRKLDPQGARARMNNYFGKLIDFFDGLVEERLERETKLSTDVLDSLLEFMMEDNSQVTRPHLLHLFLDLFVAGTDTTSSTIEWAMSELLRNPEKLEQVRKELQQVIGKDEQEQIEESYITKLPYLRAVVKETFRLHPPIPLLVPHKSEDNVEICGFMVPKDAQVLVNVWAMGRDSNIWRNPDEFLPERFLENDVDFKGQDFELIPFGAGRRICPGLPLASRTIHIVLASLLYNYDWKLANGKKKEDIDMSETYGITLHKTHPLHVISIQA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211786g00006 285 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 221 230 IPR017972 GO:0005506|GO:0016705
Stsc211786g00006 285 PRINTS E-class P450 group I signature 76 93 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211786g00006 285 PRINTS E-class P450 group I signature 141 159 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211786g00006 285 PRINTS E-class P450 group I signature 96 122 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211786g00006 285 PRINTS E-class P450 group I signature 228 251 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211786g00006 285 PRINTS E-class P450 group I signature 182 206 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211786g00006 285 PRINTS E-class P450 group I signature 218 228 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211786g00006 285 FunFam Geraniol 8-hydroxylase 28 281 - -
Stsc211786g00006 285 PRINTS P450 superfamily signature 87 104 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211786g00006 285 PRINTS P450 superfamily signature 142 153 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211786g00006 285 PRINTS P450 superfamily signature 228 239 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211786g00006 285 PRINTS P450 superfamily signature 219 228 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211786g00006 285 Pfam Cytochrome P450 5 274 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211786g00006 285 Gene3D Cytochrome P450 1 284 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211786g00006 285 SUPERFAMILY Cytochrome P450 4 281 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211786g00006 285 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 1 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211786g00006 Stsc-Chr211786 20105 22297 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211786g00006 1 278 Cytochrome P450 AT1G33730 53.333 4.24e-111 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211786g00006 - K23810 gmx:100809483 459.144