Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211782g00005 ATGAATAATTTCCATCCAAAAACCTCTCTTCACCTCACTCATCATCATCACTTACCTACTGAAGATGAGAGCCCAATCAACCTTGACCTTCTTCTTGAGCCTGCTTCTTCTTCTTCTTCAACTTCTTCATCTTCACCTTTCAGTGGTAATAATAATAATAATAGTATGATGGAGGCAAGGGTATTCTCATGCAACTACTGCCAGAGAAAGTTCTACAGCTCTCAGGCCTTGGGAGGACATCAAAACGCTCACAAGCTCGAAAGGACGCTCGCCAAGAAGACCAGGGAGATCACTTCATCATCCATGCAAGATCATCACAGATCATCAAACTTCATCAATTCTCCTTCACATCATGCTTTTGGTGTTCTTGACAACCATGTCCATGGTGCTGCAGGAAGAAGAGATAATAATAATAATAATAATAGCTTCAGCTACTACGGTAGTAGCGGTTCAAAACAAGGTGTGGCTTCTTCTTCTTGGTCCCGTGCTGGAAATGTTCACCAGGAGGATATTAGCCAACTTGACTTGTCCTTAAGGCTTTAA 543 0.4199 MNNFHPKTSLHLTHHHHLPTEDESPINLDLLLEPASSSSSTSSSSPFSGNNNNNSMMEARVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKTREITSSSMQDHHRSSNFINSPSHHAFGVLDNHVHGAAGRRDNNNNNNSFSYYGSSGSKQGVASSSWSRAGNVHQEDISQLDLSLRL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211782g00005 180 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Stsc211782g00005 180 MobiDBLite consensus disorder prediction 128 148 - -
Stsc211782g00005 180 MobiDBLite consensus disorder prediction 1 22 - -
Stsc211782g00005 180 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 11 108 IPR044246 GO:0009788
Stsc211782g00005 180 SUPERFAMILY beta-beta-alpha zinc fingers 59 89 IPR036236 -
Stsc211782g00005 180 Gene3D Classic Zinc Finger 36 117 - -
Stsc211782g00005 180 MobiDBLite consensus disorder prediction 132 148 - -
Stsc211782g00005 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211782g00005 Stsc-Chr211782 22802 23344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211782g00005 3 180 C2H2 Transcription Factor Family AT5G57520 43.017 8.09e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc211782g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211782g00005 - - aip:107620426 223.787