Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211782g00004 ATGGAATCTGCTACTACTACTCCCACAGAACAAAAATTTATCTTCCGATCCAAGCTTCCTGACATTCCAATCCCCACCCACCTTCCTCTCCATTCTTACTGCTTCCAGAATCTTCCACTCTTCCATGATCGCCCATGCCTCATCGATGCAGAAACCGGAACCACTCTCACCTATGCTGATGTCCACCTCGCCACCCGCCGCATCTCCGCTGGCCTCCACTCCATTGGCATCCGCAAGGGTGACGTCATCATGCTCGTCCTTCGCAACTGTCCTGAATTCGCCCTCGCTTTCCTTGGCGCCTCCCGCTGTGGCGCCCCGATCACCACCGCGAACCCCTTCTACACACCCGCCGAGCTGGCCAAGCAAGCCACCGCCACCAAAACTAAGCTCATCATAACGCAATCCGCCTACGTGGAGAAATTCAAAGAGTACGTGGAAACCAACAATGGAGACGTCAAGATCATCTCCATTGATGGATCTCCTGATGAAGAATCACAAGAAAAGGACAATAGTGTTCTGCAATTTTCTCTCCTCACAAGCTCCAATGAAAACGACGAGCCTCAGGTTAACATCACCCCCGACGATCTGGTAGCCATCCCGTTCTCCTCCGGGACCTCGGGGCTGCCGAAGGGGGTGATGTTAACGCACAGCAACCTGGTTACAACGGTGGCGCAGCTTGTTGACGGCGAGAATCCTCACCAGTACACGCACAGCGAGGACGTGCTCCTGTGCGTGCTGCCAATGTTTCATATATACGCGCTGAACTCCATCTTGCTGTGTGGGATTCGTGCTGGTGCGGTGGTTCTGATTGTGCAGAAGTTTGAGATAACTACACTGATGGAGTTGATAGAGAAGTACAGGGTGACGGTGGCGTCTCTTGTGCCGCCAATAGTGTTGGCGGTGGTGAAGAGTGGGGATGCTCACAAATATGATCTGTCTTCGATTCGTGGGGTGATATCAGGTGCTGCTCCCATGGGAATGGAGCTTCAGGAAGCTGTCAAGGCTAGGCTTCCCCATGCCACCCTCGGACAGGGGTACGGGATGACAGAAGCAGGGCCATTAGCCATAAGCTTAGCATTTGCAAAGGAACCATTCAAGGTTAAATCAGGTGCATGCGGGTCCGTTGTTAGAAACGCTGAAATGAAAATCGTGGACCCTGACACCGGTGCTTCCCTTCCACATAACAAACCCGGTGAAATTTGCATTCGAGGCACTAAAGTCATGAAAGGGTACCTGAATGACCGAGACGCGACTGATAGAACCATAGACAAAGAGGGATGGTTACATACGGGTGACATTGGTTACCTTGATGATGATGAAGAGCTCTTCATCGTTGATCGCTTGAAGGAGCTTATCAAATACAAAGGTTACCAAGTGGCACCTGCTGAGCTGGAATCTTTGTTGATTGCCCATCCAAACATCTCTGATGCCGCTGTTGTACCCATGAAAGATGAAGTTGCTGGAGAAGTACCAGTTGCATTTGTTGTAAGATCAAATGGTTCTAATATCACCGAGGATGAAATCAAGAAATATATTTCTAAACAGGTGGTATTTTACAAGAGAATAAACAGAGTGTTCTTCACTGAAAGTATTCCTAAAGCAGCGTCAGGCAAAATTCTGAGGAAGCTATTAACAGCAAGGCTTAACGAAGGTTTGGTGGGTAATTAG 1668 0.4964 MESATTTPTEQKFIFRSKLPDIPIPTHLPLHSYCFQNLPLFHDRPCLIDAETGTTLTYADVHLATRRISAGLHSIGIRKGDVIMLVLRNCPEFALAFLGASRCGAPITTANPFYTPAELAKQATATKTKLIITQSAYVEKFKEYVETNNGDVKIISIDGSPDEESQEKDNSVLQFSLLTSSNENDEPQVNITPDDLVAIPFSSGTSGLPKGVMLTHSNLVTTVAQLVDGENPHQYTHSEDVLLCVLPMFHIYALNSILLCGIRAGAVVLIVQKFEITTLMELIEKYRVTVASLVPPIVLAVVKSGDAHKYDLSSIRGVISGAAPMGMELQEAVKARLPHATLGQGYGMTEAGPLAISLAFAKEPFKVKSGACGSVVRNAEMKIVDPDTGASLPHNKPGEICIRGTKVMKGYLNDRDATDRTIDKEGWLHTGDIGYLDDDEELFIVDRLKELIKYKGYQVAPAELESLLIAHPNISDAAVVPMKDEVAGEVPVAFVVRSNGSNITEDEIKKYISKQVVFYKRINRVFFTESIPKAASGKILRKLLTARLNEGLVGN 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211782g00004 555 SUPERFAMILY Acetyl-CoA synthetase-like 8 550 - -
Stsc211782g00004 555 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 545 - -
Stsc211782g00004 555 Pfam AMP-binding enzyme 42 454 IPR000873 -
Stsc211782g00004 555 Gene3D - 6 448 IPR042099 -
Stsc211782g00004 555 FunFam Long-chain-fatty-acid--CoA ligase FadD 16 449 - -
Stsc211782g00004 555 CDD 4CL 24 544 - -
Stsc211782g00004 555 Gene3D - 449 552 IPR045851 -
Stsc211782g00004 555 Pfam AMP-binding enzyme C-terminal domain 463 538 IPR025110 -
Stsc211782g00004 555 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
Stsc211782g00004 555 FunFam 4-coumarate--CoA ligase 2 450 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211782g00004 Stsc-Chr211782 9185 12976 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211782g00004 14 516 Monolignol Biosynthesis Gene Families AT1G51680 65.483 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211782g00004 K01904 - gmx:548034 872.078