Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211780g00012 GAAACTATAAACAGGCCTTTTCATCCACATTGGACTAGTTCTATGCAGGCATATCATAATGCTGGTTCTACCCCAAATCCCTTCTTAAACCCTCATGCTTCTGGTCCTTACTTCAGCCATTGCATTTGGCCAAATCAGTCGAACATCGCTCAAGTTCATTATAATTTTATGCATGACTCCATGAAGTTTTCTAATAATTCTGCTGTAGCTGGAGTGATTCCAAATCATCAGCAACAACCAAGTGTTGTCCCAGTTGTTGGGGATGCTGCATCAGTTTTTTCGGAAAAAGTACAAAGGATGTTTGGTGCAAATAACAAAGATTCAATTAAAAAGGGTGATGGAAACTTACAATCTAAAAGCTCAATCACTAAAGAAGCAAGAGAAGCTGAGCATGGTTGTTCAACTCCAAACCATGACATGAGTGGAGCAAGTGGAGGCAAAGAAGGCCAGTGCAGTAAAAATGATTTCCCTTCACCAAAGCAGAAATGCAATGTGATGCCTGGCAATGAAAATTCGACAAAACAGAACAAGGACACAATTGCTGTCCTAAATGCTTCTGGCAGTATAGTTCAACTTGCAAAGCTGGAAGATGATGAAAAAAGGAAAGAAAGAAAAAGACAATCTAATCGCGAATCAGCCAAGAGATCAAGGTTAAGAAAACAGAAAGAATGTGAAGAGCTACATGGAAACATGGAAAGTCTAAAGGATGAAAATTCCTCGCTCACACAAACGCTTGTAAGGCTTTCAGAGGAATGTCTGGATCTCAGCAATGAAAACGATTCCATCCAGGAAGAGCTGGTTAAGATGTATGGAGCAGAATCAATAGCAGATCTATTGCCCATGAAGCCTTCTTGA 855 0.4012 ETINRPFHPHWTSSMQAYHNAGSTPNPFLNPHASGPYFSHCIWPNQSNIAQVHYNFMHDSMKFSNNSAVAGVIPNHQQQPSVVPVVGDAASVFSEKVQRMFGANNKDSIKKGDGNLQSKSSITKEAREAEHGCSTPNHDMSGASGGKEGQCSKNDFPSPKQKCNVMPGNENSTKQNKDTIAVLNASGSIVQLAKLEDDEKRKERKRQSNRESAKRSRLRKQKECEELHGNMESLKDENSSLTQTLVRLSEECLDLSNENDSIQEELVKMYGAESIADLLPMKPS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211780g00012 284 PANTHER G-BOX-BINDING FACTOR 3-RELATED 8 272 IPR044827 GO:0003700|GO:0006355|GO:0043565
Stsc211780g00012 284 MobiDBLite consensus disorder prediction 104 174 - -
Stsc211780g00012 284 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 199 262 IPR004827 GO:0003700|GO:0006355
Stsc211780g00012 284 SUPERFAMILY Leucine zipper domain 201 255 IPR046347 GO:0003700|GO:0006355
Stsc211780g00012 284 SMART brlzneu 196 261 IPR004827 GO:0003700|GO:0006355
Stsc211780g00012 284 MobiDBLite consensus disorder prediction 197 233 - -
Stsc211780g00012 284 MobiDBLite consensus disorder prediction 197 238 - -
Stsc211780g00012 284 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 204 219 IPR004827 GO:0003700|GO:0006355
Stsc211780g00012 284 Pfam bZIP transcription factor 199 259 IPR004827 GO:0003700|GO:0006355
Stsc211780g00012 284 Coils Coil 217 265 - -
Stsc211780g00012 284 MobiDBLite consensus disorder prediction 154 174 - -
Stsc211780g00012 284 Coils Coil 192 212 - -
Stsc211780g00012 284 CDD bZIP_plant_GBF1 202 252 IPR045314 GO:0003700|GO:0006355
Stsc211780g00012 284 Gene3D - 199 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211780g00012 Stsc-Chr211780 48592 51098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211780g00012 8 278 bZIP Transcription Factor Family AT4G36730 33.106 1.11e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc211780g00012 bZIP_1 8.5e-15 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211780g00012 K09060 - gmx:102665715 246.128