Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211780g00010 ATGCGCAACCGCAACATTCCCCCATCCATGGACCTCGACTTGGAAGCCACAGGCTTCGAATCCGAAGAAGAAGAAGAAGATGATGACGATGAATACGACGATGAACAACAACAACATCCCCAAACCTATAACATTATCAACATTCCTTCTTCCTCCCACTCGAACCCTAACAACAGCACTGAGCCCTACCTCGGCATGGAGTTCGACTCCGAGCTATCCGCACGCGCCTTCTACAACGCCTATGCGCGTCGTATTGGCTTCAGCACGCGCGTCAGCGTCTGTCTCCGCTCCCGCAAGGACTCCTCCGTCATCCGCCGCCGCGTCGTCTGCTCCCGTGAGGGCTTCCGCCGCAACCCTGAGAACCACGACCCCAAACGCCACCGCTCCGTCACACGCGTCGGCTGCAAGGCTCAGATCACAGTCAAGAAGAGAGGGGGCCCACTCGGCAGGTGGTACATCTCCAAGTTCATCAAGGACCACAACCACGACCTCGTCCCTCCCGATAGGGTCCACAACCTCCGCTCCCACCGCCGCGTCAACGGCGCCGCTCGCAGCCTCATCGATACTCTTCACGCCGCCGGCATGGGCGCTGCCGAGGTCATGACCGTACTCATCAAGGAGTCCGGTGGTATCGACAACGTAGGCTTCACGAAAGTAGACTGCCAGAACTACATGACGTCATCTTCCAAGAGGAGCCTTGGGAGTGGGAGCCAGCTTGTCTTTGATTTCTTGAAGAAGATGAGCGAAGAGGATCCTTCTGGATTCTTCTACTCCTTCCAGGGAGATTCGGAGAGTTCCTCAGGTAACATCTTTTGGGCTGATGCCAATGCCAGGAAGAATTATGAATATTTTGGAGATGCTGTTGTTTTCGATATGGCGTATAGGAGGGGACGCTTTAAGGTCCCCTTTGCGCCTTTTACAGGATGGAACCATCACGGGCAGCCGGTGCTGTTCGGCTGCGCACTGATGCTGAACGAATCCGAGGCGTCTTTTGTGTGGCTTTTTACCACGTGGCTTCAAGCAATGTATGGCCGGTATCCTGTGTCGCTTACTACTGATCAGGACAGGATAATTCACTCTGCCGTCTTGCAGGTTTTCCCGGATACTCGTCACCGGTTCTCCAAGTGGGATGTGTTTGGTGAGGTTCAGGAGAGGCTGATTGATGTGAGTGGAGTGCATCCTGAGTTCGAGTCTGAGTTACGACGGTGTGTGAACTTGTCTGAGACAGTTGATGAGTTTGAGTCTAGCTGGAAGTCCCTTGTTGGGAGGTATGGGCTTCTGGATAATGAATGGCTTCAGTTGATGTATAGGAATCGCCATCAGTGGGTTCCGGTTTATCTCCGCGACACATTTTTTGGCGACTTGTCTGCCATCCATGGGAGTGATACTAGCAACTCGTACTTTGATGGGTTTATAACTCCAACGACTACTGTTCAGACGCTGATTAAGCAGTATGAGAAAGGAATCGCGTATCGATATGAGATGGAAGTGAAGGAGGATTATGATACGCTGAACACTGCGCCGGATTTGAGGACTCCTTCTCCAATGGAAAAACAAGCCGCTGGTCTCTACACGAGGAAAATATTTGCAAGGTTCCAAGAGGAATTGGTTGAGACCCTTGCATATGCTGCTACGTTGCTGGATGATGCAAGATCACAAGCTACTTATCGGGTGGCAAAGTACGGAGAGGAGAACAGGGCGCATTTTGTTAGGTTCAATGTCTTCAGGAAGAAAGCTAGTTGCAGCTGCCAGATGTTCGAGTTTGCGGGTCTTGTCTGTCGGCACATACTAGCAGTTTTTAGGGTCATCAATGTTCTTACGCTTCCGTCCCATTACATCTTGAAACGGTGGACGAGAAATGCAAAGAGTATCTTGTTGGATAAAGGAGCTCGTGAATTGCAAAATAGTGTGGAAGAGTCTTACTCTGCTCGCTACGATAGTTTGAGCCGGGAAGTTATGAGTTATGTAGAAATGGGGTCAGAATCAGTGGATATTTATGGCGTTGCGCGGGATGCTCTTCGTGAGGCTGCAAAGAAGGTTGCAGATGCAAAGAAACCTCGTCCAGCACCTGTGCAAAGTACTTCTGATAATAATGAAAACCATGAGAGTAGTCAATCTTGTGATACAGATCAGGATAAGAAAATTCAAGAGTTGACTACTGAATTAGAAGGTGCTCGGCAGCGATGTGAATCGTATCGGCAAAACCTGTTTAGCTTACTAAAAAATATGGAGGAGCAGAAGTTGAAAATATCTGTTAAGGCTCAGAGTGTTAGGCTAAATCTAGGAAATGAATTGGTAGCTGAAGAAAGTAAGTAG 2316 0.4974 MRNRNIPPSMDLDLEATGFESEEEEEDDDDEYDDEQQQHPQTYNIINIPSSSHSNPNNSTEPYLGMEFDSELSARAFYNAYARRIGFSTRVSVCLRSRKDSSVIRRRVVCSREGFRRNPENHDPKRHRSVTRVGCKAQITVKKRGGPLGRWYISKFIKDHNHDLVPPDRVHNLRSHRRVNGAARSLIDTLHAAGMGAAEVMTVLIKESGGIDNVGFTKVDCQNYMTSSSKRSLGSGSQLVFDFLKKMSEEDPSGFFYSFQGDSESSSGNIFWADANARKNYEYFGDAVVFDMAYRRGRFKVPFAPFTGWNHHGQPVLFGCALMLNESEASFVWLFTTWLQAMYGRYPVSLTTDQDRIIHSAVLQVFPDTRHRFSKWDVFGEVQERLIDVSGVHPEFESELRRCVNLSETVDEFESSWKSLVGRYGLLDNEWLQLMYRNRHQWVPVYLRDTFFGDLSAIHGSDTSNSYFDGFITPTTTVQTLIKQYEKGIAYRYEMEVKEDYDTLNTAPDLRTPSPMEKQAAGLYTRKIFARFQEELVETLAYAATLLDDARSQATYRVAKYGEENRAHFVRFNVFRKKASCSCQMFEFAGLVCRHILAVFRVINVLTLPSHYILKRWTRNAKSILLDKGARELQNSVEESYSARYDSLSREVMSYVEMGSESVDIYGVARDALREAAKKVADAKKPRPAPVQSTSDNNENHESSQSCDTDQDKKIQELTTELEGARQRCESYRQNLFSLLKNMEEQKLKISVKAQSVRLNLGNELVAEESK 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211780g00010 771 Pfam SWIM zinc finger 578 603 IPR007527 GO:0008270
Stsc211780g00010 771 MobiDBLite consensus disorder prediction 1 38 - -
Stsc211780g00010 771 SMART 26again6 579 606 IPR006564 GO:0008270
Stsc211780g00010 771 Pfam MULE transposase domain 288 377 IPR018289 -
Stsc211780g00010 771 Coils Coil 715 742 - -
Stsc211780g00010 771 Pfam FAR1 DNA-binding domain 77 166 IPR004330 -
Stsc211780g00010 771 ProSiteProfiles Zinc finger SWIM-type profile. 572 604 IPR007527 GO:0008270
Stsc211780g00010 771 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 54 682 IPR031052 GO:0006355
Stsc211780g00010 771 MobiDBLite consensus disorder prediction 16 35 - -
Stsc211780g00010 771 MobiDBLite consensus disorder prediction 679 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211780g00010 Stsc-Chr211780 41141 44747 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc211780g00010 MULE 1.4e-18 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211780g00010 - - cave:132190504 975.311