Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211778g00002 ATGGAGGAGGAATATGATGATGGGTGGTTGATGTGGATGAAGAGAAAACAAGTGATTGTTGGAAACAAGAGTAGTTACTCATCATCATCATCATGGGAAGAGAGGGCATTTGCAGAAGATGCAGCAAGAGTTCTTGGTGGGAGCACATGGCCACCAAGATCATACACTTGTACTTTCTGCAACAGACACTTCACCTCTGCTCAAGCACTTGGTGGTCACATGAATGTTCACCGAAGAGATAGGGCCAGGCTCAAACAATCTACCCTCAATCTCAAATCAGTGTTCACAGGAGAAGATGATCAACATGTTATAAAGGGCCCTTATTCTTCTTCAAATAAAAGGGGACAACAGAAGAATTTTGAGGATGATGAAAACACCATGATCAGTTGTAAGAAGAAGATAAAGACTACTACTACTACCACCATTTTCTGTCTCAAGCCATATTCAAAGGATAATGGAATTGAAGACTTGGATCTTGAACTCAGGCTAGGTGCCAAACAACAAAAAGTTAACTAG 516 0.4109 MEEEYDDGWLMWMKRKQVIVGNKSSYSSSSSWEERAFAEDAARVLGGSTWPPRSYTCTFCNRHFTSAQALGGHMNVHRRDRARLKQSTLNLKSVFTGEDDQHVIKGPYSSSNKRGQQKNFEDDENTMISCKKKIKTTTTTTIFCLKPYSKDNGIEDLDLELRLGAKQQKVN 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211778g00002 171 SMART c2h2final6 55 77 IPR013087 -
Stsc211778g00002 171 Gene3D Classic Zinc Finger 49 141 - -
Stsc211778g00002 171 PANTHER OS07G0101800 PROTEIN 15 166 - -
Stsc211778g00002 171 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Stsc211778g00002 171 SUPERFAMILY beta-beta-alpha zinc fingers 52 81 IPR036236 -
Stsc211778g00002 171 Pfam C2H2-type zinc finger 55 79 - -
Stsc211778g00002 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Stsc211778g00002 171 MobiDBLite consensus disorder prediction 102 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211778g00002 Stsc-Chr211778 4297 5064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211778g00002 30 147 C2H2 Transcription Factor Family AT2G37740 50.847 2.10e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc211778g00002 zf-C2H2_6 3.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211778g00002 - - aip:107608478 252.677