Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211776g00003 ATGGTTATTGGAACAAGGTTGTTTCTGTTCATGTTTGCTTTGTGTTTGTGGATATTTCCCAATGAAGGAGTGGGAAGAACAGGGCCTTCACCTAATAGTAATACCACTGTGAATTCCACTGTTCCTTCTTCAAGACCAAAGGTTGTGAAGATTGGAGTCTTGTTTACTTTGAATTCCTCCCTTGGAAAATCTGCTAAACCTGCTGTTATGGCTGCCATAGAAGATGTTAACTCCAATAGAACCATTCTCCCTGGCATTCAGCTTCAGGCTATTTTTCACGACACAAATTGCAACGGCTTTCTTGGAACAATGGAAGCTCTGCAGTTGATGGAGAATGATGTCTTCGCCACTATCGGACCGCAGTCTTCTTCAATAGCTCATGTCATCTCTCATGTATCTAATGAACTTCATGTACCTCTTCTATCATTTGCTGCAACTGATCCTACTCTATCTGCACTTCAGTATCCCTATTTTGTCCGCACCACACACAGTGACTACCATCAGATGTATGCAATCGCAGACTTTGTTGAATATTTCAGATGGAGGGAGGTAATTGCCATTTTTGTAGATGATGAGTATGGAAGAAACGGAATTTCTGCGCTCAGTGATGCATTGTCATCGAAGCGTGCCAAGGTCTCTTACAAGGCTGCTCTCCCTCCTGGTGCCAACATAAGTGATGTCAGTGACTTGTTGAGTGAAGTGAACTTAATGGAATCAAGAGTCTATGTTCTCCATGTTAATCCTGGTTCTGGTTTGTCTATCCTTGGTGTTGCGAAGCAGCTAGGAATGATGAGCAATGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCGGTTCTGGATTCGTCCGAGACACCAGACTCTAACACAATGAATGCTCTGGAAGGTGTTGTGGCTTTCCGCAATTACATTCCTGATACTGATATCAAGAAGAGTTTGCTTGCTAAGTTGAAAAGCCGGATGGACAAGGAGACTTCTAGTTTCAATTCCTATGCATTCTATGCATATGATTCTGTCTGGTTAGCAGCTCGGGCACTTGACATTTTTCTCAATGAAGGTGGAAACATATCTTTCTCCAGTGACCCTAGATTGCATGACAATTATGGAAGCACCTTGAATTTAGGATCACTTCGCACTTTTGATGGCGGCCCTCAGTATCTGCAGACTATTTTGAGAGCAAACTTCACTGGTGTGAGTGGTCGAGTTGGGTTTGACAGAGATAGGAATTTAATCCGTCCGGCCTATGATATTCTGAATATTGTTGGATCCGGATTGCATAGAATTGGTTACTGGTCTAATCACTCTAGTTTGTCAGTTGTAGCTCCTGATATTTCATATGCGAAATCATCTAACAATTCTTCTATAAGCACTCCACAGCTTTATAGTGTCATATGGCCGGGAGATGCTAAAACTACTCCGAAAGGATGGGTATTCCCAAACAATGGAAAGCCATTGCGAATAGCAGTGCCGAATCGAGTAAGCTACAAGGAGTTCGTTTCCAAAGACAATAGTCCTACAGGAGTACAAGGCTACTGCATTGATGTCTTCGAAGCGGCATTGAACTTGCTGGCTTATCCTGTCCCACGACAATATATATTGTATGGAAATGGTGAAAGGAATCCTGAATACAACGATCTTGTAGATCAAGTTGCACAAAATAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTGATGAACAGAACAAGGTTTGTGGATTTTACTCAGCCGTTCATGGAATCAGGGCTTGTTGTTGTTGTTCCTGTCAAGGAGGAGAAGTCAAGCCCGTGGTCTTTCCTTAAGCCATTCACAGCTCAAATGTGGTGTGTTACTGGTGCTTTCTTTCTTTTTGTGGGAACCGTCGTGTGGATCCTCGAGCACCGGCTCAATCACGAGTTCCGCGGTCCACCAAGGAAGCAACTTATAACAGTCTTCTGGTTTAGTCTGTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTGCTCTTGGGAGATTGGTGCTAATCATATGGCTATTTGTGGTGTTGATTATCAACTCAAGCTACACAGCTAGCTTGACATCGATCCTCACCGTGCAGCAGTTGTCATCACAGATTGAAGGAATTGATAGCTTGATCTCTAGTGGTCAACCAATCGGAATTCAAGACGGGTCATTCGCAAAGAAGTATCTGACAGATGAACTCAACATAGCAGAATCTAGGATAGTTAGATTGAAAAACATGGAGGCTTATATCGATGCTCTTCAGCGTGGGCCGGGAAATGGAGGGGTTGTGGCAGTTGTTGATGAGCTTCCTTATATTGATATCTTGATGGCCAATACCGACTGCAAGTTTAGAACTGCATTCCAGAGGGACTCTCCCCTCGCCGTCGACATGTCAACTGCGATTCTTGAACTCTCGGAAAACGGGGACCTGCAAAAGATCCATGACAAATGGCTTAACAAGATGGAGTGTGCAAGCAATGATGCTGATTCAAACAAACTATCACTGAAAAGTTTCTGGGGCCTCTTCCTTGTGTGTGGCATTGTTTGTGTCCTTGCACTGATTGTGTTCTTCACCAGAGTGTTCTGTCAGTACACAAAGCTCATGCCAGAGCACGGGGAGGCCGACGAGGAGATTCAACAGCCGGTCCGGCGGAGTAGAAGGGCAACGAAAACTCCTAGCTTCAAGGAATTGATTGTTTTTGTAGATAAAAAGGAAGCAGAAATCAAAGAGATACTTAGACAGAAGAATAGAAAAAGGCAACGCAGCACAAGCTTAGATGAGAACTCTAATTCACCAATCTAA 2790 0.4348 MVIGTRLFLFMFALCLWIFPNEGVGRTGPSPNSNTTVNSTVPSSRPKVVKIGVLFTLNSSLGKSAKPAVMAAIEDVNSNRTILPGIQLQAIFHDTNCNGFLGTMEALQLMENDVFATIGPQSSSIAHVISHVSNELHVPLLSFAATDPTLSALQYPYFVRTTHSDYHQMYAIADFVEYFRWREVIAIFVDDEYGRNGISALSDALSSKRAKVSYKAALPPGANISDVSDLLSEVNLMESRVYVLHVNPGSGLSILGVAKQLGMMSNGYVWIATDWLPSVLDSSETPDSNTMNALEGVVAFRNYIPDTDIKKSLLAKLKSRMDKETSSFNSYAFYAYDSVWLAARALDIFLNEGGNISFSSDPRLHDNYGSTLNLGSLRTFDGGPQYLQTILRANFTGVSGRVGFDRDRNLIRPAYDILNIVGSGLHRIGYWSNHSSLSVVAPDISYAKSSNNSSISTPQLYSVIWPGDAKTTPKGWVFPNNGKPLRIAVPNRVSYKEFVSKDNSPTGVQGYCIDVFEAALNLLAYPVPRQYILYGNGERNPEYNDLVDQVAQNNFDAAVGDVTIVMNRTRFVDFTQPFMESGLVVVVPVKEEKSSPWSFLKPFTAQMWCVTGAFFLFVGTVVWILEHRLNHEFRGPPRKQLITVFWFSLSTMFFSHRENTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSGQPIGIQDGSFAKKYLTDELNIAESRIVRLKNMEAYIDALQRGPGNGGVVAVVDELPYIDILMANTDCKFRTAFQRDSPLAVDMSTAILELSENGDLQKIHDKWLNKMECASNDADSNKLSLKSFWGLFLVCGIVCVLALIVFFTRVFCQYTKLMPEHGEADEEIQQPVRRSRRATKTPSFKELIVFVDKKEAEIKEILRQKNRKRQRSTSLDENSNSPI 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211776g00003 929 CDD PBP1_GABAb_receptor_plant 50 441 IPR044440 -
Stsc211776g00003 929 Gene3D - 164 436 - -
Stsc211776g00003 929 FunFam Glutamate receptor 781 813 - -
Stsc211776g00003 929 PIRSF IGluLR_plant 5 928 IPR017103 -
Stsc211776g00003 929 FunFam Glutamate receptor 596 726 - -
Stsc211776g00003 929 Pfam Ligand-gated ion channel 816 844 IPR001320 GO:0015276|GO:0016020
Stsc211776g00003 929 Pfam Receptor family ligand binding region 66 422 IPR001828 -
Stsc211776g00003 929 Pfam Bacterial extracellular solute-binding proteins, family 3 496 815 IPR001638 -
Stsc211776g00003 929 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 49 879 IPR015683 -
Stsc211776g00003 929 SMART GluR_14 486 816 IPR001320 GO:0015276|GO:0016020
Stsc211776g00003 929 Gene3D - 764 821 - -
Stsc211776g00003 929 Gene3D - 68 412 - -
Stsc211776g00003 929 FunFam Glutamate receptor 164 322 - -
Stsc211776g00003 929 SUPERFAMILY Periplasmic binding protein-like I 43 477 IPR028082 -
Stsc211776g00003 929 SUPERFAMILY Periplasmic binding protein-like II 461 814 - -
Stsc211776g00003 929 MobiDBLite consensus disorder prediction 909 929 - -
Stsc211776g00003 929 Gene3D - 478 595 - -
Stsc211776g00003 929 FunFam Glutamate receptor 480 596 - -
Stsc211776g00003 929 Coils Coil 722 742 - -
Stsc211776g00003 929 Coils Coil 897 917 - -
Stsc211776g00003 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 62 78 - -
Stsc211776g00003 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 122 150 - -
Stsc211776g00003 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 335 347 - -
Stsc211776g00003 929 Gene3D - 596 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211776g00003 Stsc-Chr211776 10279 14002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211776g00003 45 784 Ion Channels AT1G05200 65.135 0.0 1035
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211776g00003 K05387 - gmx:100802782 1358.58