Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211771g00009 ATGCCAGCGGGTATTATGATTCCGGCGAGAAACATGATGTCATCGATGATCGGAAGGAACAACAACCTTGGTGGTGGGTTTGGATCTTCCTCTTCCTCTGGACTCTCTCTTGGCCAGATTGAGAACCACAACAAGGGTTCGGAGACACATCAAAGATCCATGGATATGTTTCAAGCTAACATGATGGAAGGTGCTCAATTGCACCACCACGGTCTCGACATGGCTCAGAACACGCCGGACAGCGACATCCCTAGAATCCGTGAGGACGATTTCGACAGCGCCACCAAGTCCGGCAGCGAGAACCAAGAAGGTGGGGCCTCCGGCGAGGACCAAGACCCCCGCCCTAACAAGAAGAAGCGCTACCACCGCCATACCCAGCACCAGATCCAGGAAATGGAAGCATTCTTTAAGGAGTGTCCGCACCCAGATGACAAGCAAAGGAAGGAGCTTAGCCGTGAGTTAGGGTTAGAGCCATTGCAGGTGAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGACGCAACATGAGAGGCACGAGAACACGCAGCTAAGGACAGAGAACGAGAAGCTGAGAGCGGATAACATGAGGTATAGGGAGGCTCTTAGCAATGCCTCTTGTCCCAACTGCGGTGGACCTACCGCCATTGGAGAAATGTCTTTTGATGAACATCACTTGAGGCTTGAAAATGCCAGGCTAAGGGAAGAGATAGATAGGATTTCTGCCATTGCTGCAAAGTACGTGGGGAAGCCAGTGGTGAACTACCCACTCCTTTCATCCTCATCAGTTCCAACTCGTCCGCTAGAACTCGGCATTGGTGGTTTCGGTGGGCAATCGGGCATGGGTGGCGGCGACATGTACGGAGGAGGTGGAGCGGGAGATCTTCTGAGGCCAATGAGTGGGCCCTCTGAAGCAGACAAGCCAATGATAATAGAGCTGGCAGTAGCGGCCATGGAGGAGCTAATTGGGATGGCACAGATGGGTGAGCCTCTCTGGCTAACCACAATTGATGGTGCCACCACTGTGCTTAACGAGGATGAATATGTGAGATCCTTCCCCCGTGGAATTGGACCCAAACCTAATGGATTCAAGTGTGAAGCTTCACGTGAAACCGCTGTTGTCATCATGAACCATGTTAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAATCTTCTCCGGAATAGTTTCAAGAGCGGCGACTCTGGAAGTTCTATCAACAGGGGTGGCCGGGAACTATAACGGCGCCTTACAAGTGATGACGGCGGAGTTACAAGTGCCTTCGCCGCTGGTGCCAACGAGAGAGAGCTATTTCGTAAGGTATTGCAAGCAGCACGCGGACGGCACGTGGGCAGTCGTGGATGTGTCGTTGGACAATCTGCGGCCGAGTCCGTCGGCGAGGTGCAGGAGAAGGCCTTCCGGTTGCTTGATACAAGAAATGCCCAACGGTTACTCTAAGGTCATATGGGTTGAGCATGTTGAAGTTGATGACAGAGGTGTTCATAGTCTATACAAGCAGCTTGTTAGCTCTGGTCATGCCTTTGGTGCGAAACGCTGGATTGCAACCTTGGATCGGCAGTGTGAGAGGCTGGCTAGTGCCATGGCTACAAACATACCCACTGTTGATGTTGGAGTCATAACAAACCAAGAAGGGAGGAAGAGCATGCTCAAACTGGCGGAGAGAATGGTGATAAGCTTTTGTGCTGGTGTGAGTGCTTCAACGGCCCACACGTGGACAACGCTCTCTGGAACGGGTGCTGATGACGTCAGAGTCATGACACGTAAGAGTGTTGATGACCCTGGTAGGCCACCTGGCATTGTTCTCAGTGCTGCTACTTCTTTCTGGCTCCCAGTCCCTCCTAAAAGGGTCTTTGAATTCCTCCGTGATGAGAACTCCAGAAGTGAGTGGGATATTCTTTCCAATGGCGGAGTTGTCCAAGAAATGGCGCACATTGCTAATGGAAGAGATACCGGAAATTGCGTCTCTCTCCTTCGAGTCAATAGTGCGAATTCAAGTCAGAGTAACATGTTGATATTGCAAGAGAGTTGCACAGATTCAACTGGGTCGTTTGTGATCTATGCCCCTGTGGATATTGTTGCCATGAATGTGGTTCTGAACGGAGGGGATCCTGACTATGTGGCGCTTCTTCCTTCCGGCTTCGCCATTCTTCCGGATGGGACAACCCCTCACGGAGGTGGCGAAGCCGGTGGACATGGTGGTTCTCTCTTAACTGTTGCATTTCAAATACTGGTTGACTCAGTTCCAACCGCCAAGCTCTCTCTTGGTTCTGTTGCAACTGTTAACAACCTTATTGCTTGCACTGTTGAGAGAATTAAGGCTTCCCTATCCGGGGAAGCTCCTTCATAA 2376 0.5114 MPAGIMIPARNMMSSMIGRNNNLGGGFGSSSSSGLSLGQIENHNKGSETHQRSMDMFQANMMEGAQLHHHGLDMAQNTPDSDIPRIREDDFDSATKSGSENQEGGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSSSSVPTRPLELGIGGFGGQSGMGGGDMYGGGGAGDLLRPMSGPSEADKPMIIELAVAAMEELIGMAQMGEPLWLTTIDGATTVLNEDEYVRSFPRGIGPKPNGFKCEASRETAVVIMNHVNLVEILMDVNQWSTIFSGIVSRAATLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHSLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTPHGGGEAGGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEAPS 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211771g00009 791 FunFam Homeobox-leucine zipper protein HDG1 105 191 - -
Stsc211771g00009 791 Gene3D - 355 529 IPR023393 -
Stsc211771g00009 791 ProSiteProfiles 'Homeobox' domain profile. 115 175 IPR001356 GO:0003677
Stsc211771g00009 791 SMART HOX_1 116 179 IPR001356 GO:0003677
Stsc211771g00009 791 Gene3D - 105 192 - -
Stsc211771g00009 791 CDD START_ArGLABRA2_like 307 531 - -
Stsc211771g00009 791 SUPERFAMILY Bet v1-like 551 782 - -
Stsc211771g00009 791 SUPERFAMILY Bet v1-like 305 534 - -
Stsc211771g00009 791 SUPERFAMILY Homeodomain-like 107 175 IPR009057 -
Stsc211771g00009 791 MobiDBLite consensus disorder prediction 24 49 - -
Stsc211771g00009 791 MobiDBLite consensus disorder prediction 24 44 - -
Stsc211771g00009 791 MobiDBLite consensus disorder prediction 82 96 - -
Stsc211771g00009 791 CDD homeodomain 118 176 IPR001356 GO:0003677
Stsc211771g00009 791 ProSitePatterns 'Homeobox' domain signature. 150 173 IPR017970 GO:0000981|GO:0006355
Stsc211771g00009 791 ProSiteProfiles START domain profile. 303 535 IPR002913 GO:0008289
Stsc211771g00009 791 FunFam Homeobox-leucine zipper protein GLABRA 2 312 531 - -
Stsc211771g00009 791 Pfam START domain 313 532 IPR002913 GO:0008289
Stsc211771g00009 791 MobiDBLite consensus disorder prediction 72 126 - -
Stsc211771g00009 791 Pfam Homeodomain 118 173 IPR001356 GO:0003677
Stsc211771g00009 791 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 116 785 IPR042160 -
Stsc211771g00009 791 SMART START_1 312 532 IPR002913 GO:0008289
Stsc211771g00009 791 Coils Coil 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211771g00009 Stsc-Chr211771 48082 52177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211771g00009 56 788 Homeobox Transcription Factor Family AT1G05230 78.755 0.0 1170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc211771g00009 START 5.9e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211771g00009 K09338 - gmx:100809556 1343.56