Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211771g00006 ATGGAGGTGAAATTTTTTACAAGGCATGGCAGCATGGTGATGGTGTTGTTCCTCTTGGTTTTCTGCTCCTGGATTCCAATAGAAGTGGTGGGGAGGACAGGAGCTACTATTGGAAACGCTACCGGTTCTTCTTCGAGTCCAAGAGTTTTGAGAATTGGGGTTCTGTTTACTTTGAATTCTGTCATTGGAAGATCAGCTAAAGCTGGTGTATCGGCTGCTATTGATGATGTTAATGCTAACAAAAGCATCCTTCCGCGGACTAAACTCGAAATCATGTTGCATGATACAAATTGCAGCGGCTTTCTTGGAACTGTGGAAGCTCTGCAGTTGATGGAGAATGATGTGGTTGCTGCAATTGGTCCACAATCATCTGGAATAGCTCATGTCATCTCTCATGTGGTTAATGAACTCCATGTGCCTCTTCTTTCATTCGCGACGGACCCTGCTCTAGCATCACTCCAATATCCATATTTCATCCGCACCACACCAAATGACTATTTCCAGATGTATGCAATTGCAGACTTGGTTGATCACTACAGGTGGAGGGAGGTAATAGCTATCTTTGTAGATGATGACAATGGAAGAAATGGAATCTCAGTGTTGGGCGACGCGCTTGCTAAGAAACGTGCCAAGATATCTTACAAGGCTGCATTCCCTCCTGGAGCCCCCATGAGTAACATCAGTGACTTGTTGAATCAGAAGAGTTTAATCTCAAAGCTGAAGAGCAGAAAGGACAATGAGACTTCAGGCTTCAATTCTTATGCATTCTATGCATATGATTCTGTTTGGTTGGCGGCGCGTGCTCTGGATACTTTTCTCAATGAAGGTGGAAACATATCTTTCTCCTCAGATCCTAAGTTGCAAGATACAAACTCAAGCATGTTGCATTTTTCAGCACTCCGAGTGTTTGATGGCGGCGACAAGTTTCTCCAGACAATTCAGAGAACAAACTTCACTGGTGTGAGTGGCCCAGTTCAGTTTGATATGGATAAGAATTTGATTCATCCAGCTTATGATATCATGAATATCGGGGGGTTTGGAACCCGGAGGATTGCTTATTGGTCTAATTATTCAGGTCTCTCAGTTATAGCTCCTGAAGTTTTGTATATGAAACCACCTAACATTTCATCAAGCAACCAACAACTATATAGTGTTATATGGCCTGGAGAAACAACAGTTACACCAAGGGGATGGGTATTCCCAAACAATGGGAAGCCATTGAGAATCGCGGTGCCTAATCGAGTAAGCTACTTGGAGTTTGTTGCTAAGGACAAGAACCCCCCTGGGGTAAAAGGCTATTGCATTGATGTCTTTGAAGCAGCCATAAAGTTGTTGCCTTATCCTGTCCCAACAGAATACATATTATTTGGCCATGGTGATAGAAATCCCAGCTATGATGACCTTACAAATCAGGTTGCACAAAATAACTTTGATGCAGTTGTTGGAGATATTACAATTGTCACAAACAGGACAAGGATTGTGGATTTTACTCAGCCTTACATGGAATCAGGACTGGTGGTGGTTGTGCCTGTCAAGGAAATCAAGTCAAGCCCTTGGTCCTTTCTAAAGCCATTCACTGCTAAAATGTGGTTAGTTACTGGTGCCTTCTTTGTCTTTGTGGGAGCCGTCGTGTGGATTCTTGAGCACCGGCACAATGAAGAATTCCGCGGTCCACCAAGGAAACAACTCATAACAGTGTGTTGGTTTAGTTTCTCAACAATGTTCTTCTCACACAGAGAGAACACTGTGAGTGCACTAGGGCGATTAGTGCTACTCATATGGCTTTGGGTGGTTTTAATCATCAATTCAAGTTACACAGCTAGCTTAACATCCATCCTCACAGTGCAGCAACTTTCATCACAGATTGAAGGAATTGACAGCTTGATCTCAGGTACTCAACCAATTGGGATACAAGAAGGATCATTTGCAAAAAAATATCTGATAGATGAACTCAACATAGCACCATCTAGGATAGTTACACTGAAAAATATGGAAGCATATGTTGATGCCCTTCAACGCGGGCCAAAGAATGGAGGGGTTGTGGCCATTGTTGATGAACTTCCTTATATTCAGCTCTTCATGTCCAATACCAACTGTAAGTTCAGAACAGTTGGGCAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTTCAAAGGGATTCACCCCTTGCTGTTGATTTGTCAACTGCAATCCTTCAACTCTCGGAGAATGGTGAACTGCAAAAGATCCATGACAAATGGCTTTTGAAACGAGACTGCACTGCTCAACTCGACGATGAAGACTCGAATAAACTGTCTCTGAGCAGCTTCTGGGGCCTCTTCCTCATATGTGGCATTGCATGCTTCCTTTCTTTGGTTGTATTCTTTGTTAGAGTGTTCTGTCAATACACCAGATTTAGCCCTGAGCCTGAACAAGTCGACGAGGAAACTCCACGAGAAAGGCCTTCTAGAAGGAACCTCAAAAGTACTAGTTTCAAGGACTTGATGGTATTTGTGGATAAGAAAGAAGCAGAAATCAAAGAGATACTTAGGCAGAAGAGTAATAAAAGGAGAAGAAGCCAGAGTCTAGATGAGCAATCTAGTTCATCACCCTCCTAA 2598 0.4296 MEVKFFTRHGSMVMVLFLLVFCSWIPIEVVGRTGATIGNATGSSSSPRVLRIGVLFTLNSVIGRSAKAGVSAAIDDVNANKSILPRTKLEIMLHDTNCSGFLGTVEALQLMENDVVAAIGPQSSGIAHVISHVVNELHVPLLSFATDPALASLQYPYFIRTTPNDYFQMYAIADLVDHYRWREVIAIFVDDDNGRNGISVLGDALAKKRAKISYKAAFPPGAPMSNISDLLNQKSLISKLKSRKDNETSGFNSYAFYAYDSVWLAARALDTFLNEGGNISFSSDPKLQDTNSSMLHFSALRVFDGGDKFLQTIQRTNFTGVSGPVQFDMDKNLIHPAYDIMNIGGFGTRRIAYWSNYSGLSVIAPEVLYMKPPNISSSNQQLYSVIWPGETTVTPRGWVFPNNGKPLRIAVPNRVSYLEFVAKDKNPPGVKGYCIDVFEAAIKLLPYPVPTEYILFGHGDRNPSYDDLTNQVAQNNFDAVVGDITIVTNRTRIVDFTQPYMESGLVVVVPVKEIKSSPWSFLKPFTAKMWLVTGAFFVFVGAVVWILEHRHNEEFRGPPRKQLITVCWFSFSTMFFSHRENTVSALGRLVLLIWLWVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQEGSFAKKYLIDELNIAPSRIVTLKNMEAYVDALQRGPKNGGVVAIVDELPYIQLFMSNTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGELQKIHDKWLLKRDCTAQLDDEDSNKLSLSSFWGLFLICGIACFLSLVVFFVRVFCQYTRFSPEPEQVDEETPRERPSRRNLKSTSFKDLMVFVDKKEAEIKEILRQKSNKRRRSQSLDEQSSSSPS 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211771g00006 865 Pfam Ligand-gated ion channel 750 781 IPR001320 GO:0015276|GO:0016020
Stsc211771g00006 865 Coils Coil 832 859 - -
Stsc211771g00006 865 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 52 819 IPR015683 -
Stsc211771g00006 865 FunFam Glutamate receptor 644 752 - -
Stsc211771g00006 865 PIRSF IGluLR_plant 232 865 IPR017103 -
Stsc211771g00006 865 PIRSF IGluLR_plant 9 238 IPR017103 -
Stsc211771g00006 865 FunFam Glutamate receptor 68 190 - -
Stsc211771g00006 865 SUPERFAMILY Periplasmic binding protein-like I 44 399 IPR028082 -
Stsc211771g00006 865 SUPERFAMILY Periplasmic binding protein-like II 383 749 - -
Stsc211771g00006 865 CDD GluR_Plant 405 748 - -
Stsc211771g00006 865 Gene3D - 402 518 - -
Stsc211771g00006 865 Pfam Receptor family ligand binding region 246 343 IPR001828 -
Stsc211771g00006 865 Pfam Receptor family ligand binding region 69 231 IPR001828 -
Stsc211771g00006 865 Gene3D - 46 220 - -
Stsc211771g00006 865 SMART GluR_14 408 750 IPR001320 GO:0015276|GO:0016020
Stsc211771g00006 865 Gene3D - 224 334 - -
Stsc211771g00006 865 MobiDBLite consensus disorder prediction 845 865 - -
Stsc211771g00006 865 Gene3D - 642 751 - -
Stsc211771g00006 865 Gene3D - 519 641 - -
Stsc211771g00006 865 FunFam Glutamate receptor 518 648 - -
Stsc211771g00006 865 FunFam Glutamate receptor 402 518 - -
Stsc211771g00006 865 Pfam Bacterial extracellular solute-binding proteins, family 3 422 749 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211771g00006 Stsc-Chr211771 31417 34952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211771g00006 42 848 Ion Channels AT2G17260 48.712 0.0 797
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211771g00006 K05387 - gmx:100799912 975.696