Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211771g00005 ATGCCTGCTAGTGTGAACCTTGGTGCAGTCTTCACCTTCGATTCAGTCATAGGTAGAGCTGCAAAGGTGGCCATGAAAATGGCCGTTGATGATGTCAATGCTGACCCTAGAGTCCTCAGTGGGACCAAACTCAACTTGATAATGAAGGATGCTGAGTGCAGTGTCTTTCTGGGAGCAATTGGAGCTTTTCAGGCACTCGAGGAAGGGATTGTAGCAATGGTTGGCCCACAGTCATCTTCCATAGCTCATATGGTATCTCAAATTGCTGATGCTCTCCAAGTGCCTCTTGTCTCATATGGTGCCACTGATCCTACCCTGTCATCCCTTCAGTTCCCTTACTTTTTTCGTACTATACAAAGCGACTTGGAGCAGATGATTGCAGTAGCTGATCTAATTGAATTCAATGAATGGAAGGAGGTCATTGCTGTATACTTGGATGATGATTATGGAAGAAATGGAATATCGGCTTTGAGGGATGAACTCGAAAATAGGAGATTGAAGATTTCTCATAAGCTTCCTTTGAGTATTCAGTTTGATTCAAATGAAATCACCACTTTGCTGAACCAATCCAAATCGTTTGGTCCTCGGGTGTATGTTGTTCATATCAACCCAGATCCAAAACTGAGATTCTTCAACATTGCCAACAAACTTGAAATGATGACCAAAGACTATGTTTGGATAGTCACTGATTGGCTCTTTGCTACCTTAGATTCTTTCTCCCCAGTGAATCAGACTTCTCTCAGTGTTCTCCAAGGGGTTGTTGGTTTTCGTCAGCATATTCCAGATTCCCGAAGGAAGAGAGATTTTGTTTCTAAATGGAGAAATGCACATAAAGGTGTAACAAATGGTGGTTTGAATGCCTATGGATACTATGCTTATGATACAATATGGGCAGTTGCGCGATCAATTGACGGATTCATCAAAGTACATAGTAATATTACCTTTGTAGTTAATAATACCAATAAGCCATCTCACACACAAGGAAATGATCTTCAGCTTGACAAGCTCAAAGTCCTTGCTGGTGGATTTGAGCTGGTCAATATATTATTACAGTCGAATTTTACTGGCGTGACTGGTCGACTTCAGTTTAATTCAAATAGAAATATCATAAGTGGTGGTTATGATGTTATAAATATCAATCAGAATGCAATGACTACAGTTGGTTATTGGTCTAATTGTTCTGGATTTTCAGTCATCCCAGCAGAAATTCTTAAAAGTAAGAAATGTAAAAGGTTAACTCAAGGTCAGAAGCTTGGCAATATTACTTGGCCTGGTGGAGGAACAGAAAGACCGCGCAGCTGGGTGATTGCTGGTAATGGAAGAGCACTGAGAATTGGAGTACCACGAAGAGTAAGTTTTGTTGAATTTGTGACTGTGAAAGATCATCAAATTCAGGGCTACTGCATTGATGTCTTCAACAAGGCCCTGGAATTTATTCCATATGATGTTCCTCATAAGTTCATTCCTGTCGGGGATCGTAAAGAAAATCCAAGCTATGATGCACTAGTGAAAAATGTTGCTGACAATGTATATGATGCAGTTGTTGGAGACATTGCAATTGTGACAAACCGTACACAGTATGTGGATTTTTCTCAGCCTTATGCAACATCTGGTCTTGTTATCGTGGCTCCTATCGACAATGCAAGAACAAATGCTTGGGTGTTTCTCCAGCCATTCACAGCAGATATGTGGTGTGTTACTGCTGCTTCATTTGTGATGATTGGAGTGGTTATATGGATTCTTGAGCACCGAGTCAATGATGATTTCCGTGGTCCTCCCAAGAGACAACTCGTGACAGCGTTTATGTTCAGCCTCTCAACACTGTTTAAGACAAATCAGGAACGGACGATTAGTTCGCTGTCCAAAATGGTGATGATAGTCTGGCTTTTCCTATTGATGGTGATCACTGCCAGCTATACAGCAAGCTTGACTTCAATTCTTACAGTGGAGCAGCTCTCCTCGCCCATCACCGGAATCGATAGCTTGATTTCAAGCAATTGGCCCATTGGATACCAAGTAGGATCTTTCGCTTACAGCTATCTTACGGATAGTCTTTATATATCAAAATCAAGACTTGTTCAGCTAGGCTCTCCGGAGGAATATGCTATAGCTCTGCAAAAAGGGCCGTCTAGAGGAGGGGTGGCGGCTGTCATCGATGAGCTTCCTTACGTGGAGCTATTTCTGTCAAAAGAAACCGGGTTCGGTATTATTGGACAGCCATTTACCAAAAGCAGCTGGGGATTTGCTTTTCAAAAAGAGTCTCCTCTGGCCCTTGACATGTCCACGGCGATTCTGAAACTCGCCGAGACCGGAGAGCTTCAGAAGATACACGACAAGTGGCTATGCAAGATGGGTTGCTCTGAAGAAAGGACAAGCAACTCCAAGCCTGACCAGCTTCACTTGATTAGCTTCTGGGGTCTGTATCTGTTATGTGGTGCTGTCACTCTCGCTTCGCTTTTGGTGTTTCTTCTGCGAGCGATTCGCCAGTATGCTCGGTTCAAACAGCAGGAGAAGGACATTGCTGTGTCCCCATCATCAGAGCCATCAAGCACTAGCCGCCATTGTTCCCAGGTTCTCATTAACTTCTTCAACTTCATTGATAAAAAGGAAGAAGCCATAAAGAAAATTTTCACTCAATGTGACAATCCTGAACCTCAAGTCAGATAA 2667 0.4271 MPASVNLGAVFTFDSVIGRAAKVAMKMAVDDVNADPRVLSGTKLNLIMKDAECSVFLGAIGAFQALEEGIVAMVGPQSSSIAHMVSQIADALQVPLVSYGATDPTLSSLQFPYFFRTIQSDLEQMIAVADLIEFNEWKEVIAVYLDDDYGRNGISALRDELENRRLKISHKLPLSIQFDSNEITTLLNQSKSFGPRVYVVHINPDPKLRFFNIANKLEMMTKDYVWIVTDWLFATLDSFSPVNQTSLSVLQGVVGFRQHIPDSRRKRDFVSKWRNAHKGVTNGGLNAYGYYAYDTIWAVARSIDGFIKVHSNITFVVNNTNKPSHTQGNDLQLDKLKVLAGGFELVNILLQSNFTGVTGRLQFNSNRNIISGGYDVININQNAMTTVGYWSNCSGFSVIPAEILKSKKCKRLTQGQKLGNITWPGGGTERPRSWVIAGNGRALRIGVPRRVSFVEFVTVKDHQIQGYCIDVFNKALEFIPYDVPHKFIPVGDRKENPSYDALVKNVADNVYDAVVGDIAIVTNRTQYVDFSQPYATSGLVIVAPIDNARTNAWVFLQPFTADMWCVTAASFVMIGVVIWILEHRVNDDFRGPPKRQLVTAFMFSLSTLFKTNQERTISSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLISSNWPIGYQVGSFAYSYLTDSLYISKSRLVQLGSPEEYAIALQKGPSRGGVAAVIDELPYVELFLSKETGFGIIGQPFTKSSWGFAFQKESPLALDMSTAILKLAETGELQKIHDKWLCKMGCSEERTSNSKPDQLHLISFWGLYLLCGAVTLASLLVFLLRAIRQYARFKQQEKDIAVSPSSEPSSTSRHCSQVLINFFNFIDKKEEAIKKIFTQCDNPEPQVR 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211771g00005 888 PIRSF IGluLR_plant 1 887 IPR017103 -
Stsc211771g00005 888 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 78 106 - -
Stsc211771g00005 888 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 18 34 - -
Stsc211771g00005 888 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 292 304 - -
Stsc211771g00005 888 Gene3D - 553 683 - -
Stsc211771g00005 888 Gene3D - 120 395 - -
Stsc211771g00005 888 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 5 838 IPR015683 -
Stsc211771g00005 888 SMART GluR_14 444 783 IPR001320 GO:0015276|GO:0016020
Stsc211771g00005 888 Gene3D - 438 552 - -
Stsc211771g00005 888 SUPERFAMILY Periplasmic binding protein-like I 2 435 IPR028082 -
Stsc211771g00005 888 CDD PBP1_GABAb_receptor_plant 6 400 IPR044440 -
Stsc211771g00005 888 Pfam Receptor family ligand binding region 22 381 IPR001828 -
Stsc211771g00005 888 FunFam Glutamate receptor 438 552 - -
Stsc211771g00005 888 SUPERFAMILY Periplasmic binding protein-like II 421 781 - -
Stsc211771g00005 888 FunFam Glutamate receptor 552 690 - -
Stsc211771g00005 888 Gene3D - 736 788 - -
Stsc211771g00005 888 FunFam Glutamate receptor 678 785 - -
Stsc211771g00005 888 Pfam Ligand-gated ion channel 782 813 IPR001320 GO:0015276|GO:0016020
Stsc211771g00005 888 Gene3D - 23 371 - -
Stsc211771g00005 888 FunFam Glutamate receptor 120 281 - -
Stsc211771g00005 888 Pfam Bacterial extracellular solute-binding proteins, family 3 459 781 IPR001638 -
Stsc211771g00005 888 CDD GluR_Plant 443 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211771g00005 Stsc-Chr211771 23973 28531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211771g00005 2 882 Ion Channels AT2G32400 55.017 0.0 996
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211771g00005 K05387 - gmx:100796389 1342.41