Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211770g00005 ATGGTGCTTTCGATGCGCAGTTCTCCTGTTTATCCTACCGTCCATTCTCCAACAACACCAGGTCAGCAGTCATATGCAGCAGGAATTACAAACTGGTCGAGTTCTTCCTACATTGCTAGTCCTCGCTGGCAAGGTCCATCGAGTTATGCATCTTTGATTCTACCTCAGGGAGTGGTTTCGGTACCTGGCTGGGGTGCATACAATGGTCAAATGGGTTCAGACAGTGCACAACAAACAGTTGGAAATGGTCAGACATATGCATCGTCTCGCCAAGGCGAATCAACAAATGCAGGATCCCAGGGAGCATATTCTCAATACCGTTCTGGATCAGTTCCGGTAGGTTTCTATGCATTGCAGAGGGAGAACATATTTCCTGAAAGACCTGGTCAGCCTGAATGCCAATTCTACATGAAGACCGGAGATTGTAAGTTCGGTGCAGTCTGCCGTTTCCATCATCCACGTGAGAGGCTGATTCCTGCTCCTGATTGTCTTTTGAGTCCCATTGGCCTTCCTTTACGTCCTGGAGAGCCATTGTGTGTCTTTTACTCGCGTTATGGTATATGCAAATTCGGCCCGAGTTGCAAGTTCGACCACCCCATGGGAATCTTCACCTATAATATATCTACATCACCCTCAGCTGATGCTTCAGGACGGCGACTTTTGGGTTCTTCATCAGGAACCGCAGCATTAAATTTATCATCAGAAGGACTAGTCGAGTCAGGCTCCGCGAAGCCGAGGAGGCTTTCGTTATCGGAGACTAGACAACTTCCTTCCAGTGATGATAACATTGATGATGAGGGATAA 804 0.4776 MVLSMRSSPVYPTVHSPTTPGQQSYAAGITNWSSSSYIASPRWQGPSSYASLILPQGVVSVPGWGAYNGQMGSDSAQQTVGNGQTYASSRQGESTNAGSQGAYSQYRSGSVPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCLLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISTSPSADASGRRLLGSSSGTAALNLSSEGLVESGSAKPRRLSLSETRQLPSSDDNIDDEG 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211770g00005 267 ProSiteProfiles Zinc finger C3H1-type profile. 127 155 IPR000571 GO:0046872
Stsc211770g00005 267 MobiDBLite consensus disorder prediction 236 267 - -
Stsc211770g00005 267 SUPERFAMILY CCCH zinc finger 176 200 IPR036855 GO:0046872
Stsc211770g00005 267 FunFam CCCH type zinc finger protein 125 213 - -
Stsc211770g00005 267 Gene3D - 126 210 - -
Stsc211770g00005 267 MobiDBLite consensus disorder prediction 1 22 - -
Stsc211770g00005 267 ProSiteProfiles Zinc finger C3H1-type profile. 173 201 IPR000571 GO:0046872
Stsc211770g00005 267 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 175 200 IPR000571 GO:0046872
Stsc211770g00005 267 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 154 IPR000571 GO:0046872
Stsc211770g00005 267 PANTHER PROTEIN PHOSPHATASE RELATED 8 219 - -
Stsc211770g00005 267 MobiDBLite consensus disorder prediction 75 103 - -
Stsc211770g00005 267 SMART c3hfinal6 127 154 IPR000571 GO:0046872
Stsc211770g00005 267 SMART c3hfinal6 173 200 IPR000571 GO:0046872
Stsc211770g00005 267 SUPERFAMILY CCCH zinc finger 131 157 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211770g00005 Stsc-Chr211770 31674 33134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211770g00005 12 265 C2H2 Transcription Factor Family AT3G02830 57.634 5.12e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc211770g00005 zf-CCCH 2.8e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211770g00005 - - gmx:100786261 502.286