Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211769g00007 ATGAACAACAACAACAACTACTACTATAACAGAGCGAGGTACCCACCACCTGGGATCGGTGGAGGTGGTCTTGGGCGAGGAGGAGGAGGACCTGGTTTCAATCAACACGTACCGTTTCAGCCAAGGCCTAATTACCAGCAACAACAACAGCAACATCAGCAATATGTTCAGAGGCAGATGGTCCAGCAACAGCAGCAACAACAACAACAACAACAATGGCTGAGAAGGGCGCAGATGGGTGGTGCTGACTCCAACGTCGTAGATGAGGTTGAGAAGACCGTGCAGTCTGAAGCCACTGACCCGAGTTCTCAAGATTGGAAGGCAAGGCTAAAGGTTCCACCACCTGATACACGTTATAAAACAGAGGATGTAACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGAGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCAAGGGCTAAAAATGGGACAGGGAAAACGGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGACCAGGATAACAATGTTATTCAAGTTGTTATATTGGTTCCAACAAGGGAGTTGGCCTTGCAAACATCTCAAGTATGCAAAGAACTTGGAAAGCACCTGAAAATTCAAGTGATGGTTACAACAGGTGGTACTAGCCTGAAAGATGATATCATGCGCTTATATCAACCAGTTCATCTACTAGTTGGAACTCCTGGAAGGATATTGGATCTCGCTAAGAAGGGTGTTTGCGTTCTGAAAGATTGCGCAATGCTTGTTATGGATGAGGCTGATAAGCTTTTGTCCCCAGAATTCCAGCCTTCTATACAGCAGCTGATTCATTTTCTTCCTTCACACCGGCAAATTCTGATGTTTTCTGCAACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGGTTTCTTCAAAAGCCATATGTCATTAACCTTATGGATGAGCTAACTTTGAAGGGTATCACTCAGTATTATGCATTTGTTGAAGAGAGACAGAAGGTTCACTGCCTGAATACACTATTTTCTAAGTTGCAAATAAACCAATCGATAATCTTTTGCAATTCGGTGAATCGCGTTGAACTCCTTGCAAAGAAAATCACCGAGCTTGGATATTCGTGTTTCTATATTCACGCAAAGATGTTGCAAGATCATCGTAATAGAGTGTTTCATGACTTCCGCAATGGTGCATGCCGGAATCTTGTTTGCACTGATCTTTTTACTAGGGGAATAGACATTCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCCAAGAATTCTGAAACTTATCTGCACAGGGTCGGTCGCTCAGGAAGGTTTGGGCATCTTGGTTTGGCAGTGAACTTGATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGAACTGAAATAAAGCAAATTCCACCACACATTGACCAGGCAATTTATTGCCGGTGA 1515 0.4211 MNNNNNYYYNRARYPPPGIGGGGLGRGGGGPGFNQHVPFQPRPNYQQQQQQHQQYVQRQMVQQQQQQQQQQQWLRRAQMGGADSNVVDEVEKTVQSEATDPSSQDWKARLKVPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSPEFQPSIQQLIHFLPSHRQILMFSATFPVTVKDFKDRFLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211769g00007 504 SMART helicmild6 381 462 IPR001650 -
Stsc211769g00007 504 Gene3D - 335 504 IPR027417 -
Stsc211769g00007 504 MobiDBLite consensus disorder prediction 19 51 - -
Stsc211769g00007 504 FunFam ATP-dependent RNA helicase DDX6 335 504 - -
Stsc211769g00007 504 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 65 503 - -
Stsc211769g00007 504 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 130 158 IPR014014 GO:0003724
Stsc211769g00007 504 CDD DEADc_DDX6 132 332 - -
Stsc211769g00007 504 Pfam DEAD/DEAH box helicase 155 319 IPR011545 GO:0003676|GO:0005524
Stsc211769g00007 504 SMART ultradead3 149 345 IPR014001 -
Stsc211769g00007 504 Pfam Helicase conserved C-terminal domain 356 462 IPR001650 -
Stsc211769g00007 504 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 501 IPR001650 -
Stsc211769g00007 504 Gene3D - 89 334 IPR027417 -
Stsc211769g00007 504 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 331 IPR014001 -
Stsc211769g00007 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 484 IPR027417 -
Stsc211769g00007 504 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 277 285 IPR000629 -
Stsc211769g00007 504 CDD SF2_C_DEAD 342 471 - -
Stsc211769g00007 504 FunFam ATP-dependent RNA helicase DDX6 111 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211769g00007 Stsc-Chr211769 14185 19502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211769g00007 130 501 Eukaryotic Initiation Factors Gene Family AT3G19760 38.235 4.82e-94 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211769g00007 K12614 - fve:101307921 842.802