Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211765g00004 ATGGGGAAGTCGCCAGGAAAATGGATCAAAACAGTATTGTTTGGGAAGAAGTCATCCAAATCCAATATTTCAAAAGGAAGAGAGAAACTTGTTAATCAAAAGGAAGGAGTGGTGACTTCCAAGGTATCAGAAACTGATTTGGCTTTAGATCCAACCCCCGATACCGTTGCCAAAAATGAGGAAGAGCTGGTGCTAGAGAATAATGAGTCAGAAGTTATTTTAAATGAAAATCAAGAAATAAACACAGTGGGATCTGTTCTCCAAGATTCACCACCTGATCCCGAGAAAATAAAGCTGGAGGAAGCAGCAACAAAGGCACAGGCTGCTTTCAGGGGTTACTTGGCTCGAAGGGCATTTAGGGCCCTAAAAGGCATAATAAGGTTGCAAGCACTTATCCGTGGGCACCTGGTTAGGAGACAGGCTGTGGCTACATTATGCTGTATGTATGGCATTATCAAGTTACAAGCAGTTGTTCGAGGCAGAAAAGTTAGACATTCTGTTATTGGATTTGAAATCCAAGAGAAGTGCAATCTATTGAAGTCTCCGGATGGCAAGCCTGTCAAGCCAATTGCTGTACCTACAAAAATCACAAGTCTGTCAGCCAATGCTTTCATCCGTAAGCGTCTTGCTTCATCAACTACGATAATGGCCCTGCATTTGCAATATGTTCCTGGAGATCCAAATTCAGTTCTAAGCTGGTTGGAGCGCTGGTCAGCAACTAACTTCTGGAAACCAGTCCCCCAACCAAAGAAAATTCGAGACACTAAGCATCAGAGAAAGCAGGGTTCTGTGGGAGAAGCTCCATTGAGCAAGTCAAGACGTACCACCCGGAAGGTTCCTTCTGCAAGTTTTGACCCAGCCCCAGTGCAAGCAAATCCTGAACTTGAGAAGCCAAAACGAAGCTTGAGGAAAATTTCAACCCAGCCCTCAGATACACTGCAGGAAAACCCACAAAGTGAGCTTGAAAAGGTAAAGCGTAACTTGAGAAAGGTTCACAACCCAGTTGTTGAGAATACTGCTGTGCCAGAAGTAGAACCCGAGGCCCCAAAGCAACATTTGGAAAAGGCGGCATTTGCCCTGGTGCATGGTGTTTCAGAACTAGGAGTAATTAGTTCTGATGAGAAGATCAACAAAGAACCAACTCTAAGCATTTCCAATGTGCCTGATGTAGAACCTACTTCTACAAATTCCACCAAGGAGGTGTCTGATATGCCAAGCAATTATCAAGTGGTTGTGCAATCAAAGCCTTTGACAGAGATTATAAGTAAAGATGAAAACATTGCTGAAGATGAAGTGAAAATAGAGGCAAAAGATCTACCAGAAACTAGTTGCAAAGTTGAAAATTCTCACATAACAAATGGAGATTTGAGTCACAAGGAAGATCCTGTGGGAACTGAAAACCAGAAGCCAAACAGAAAGGCCTCAAATGTAGCAAAGCAGGAGCGTGCAGAGAACGGTTTACAGAATAGTCCAACATTACCAAGTTACATGGCAGCAACTGAATCTGCCAAGGCAAAGTTGAGGGCTCAAGGATCCCCACGATTAGCGAATGATGGAAGTGAGAAGAACAATGCTGCTCGGAGACATTCGCTGCCATCTTCAACTAACACCAAAATTAGCTCGCAGTCACCTAGGACACAGAGACCAGTCCACTCAGGTGGCAAAGGAAGCAACAAACCTGTATCTTCTACTAGAGAGGGCAATGGAAAGGTAATTCAAGCAGAATGGAGAAGGTGA 1737 0.4387 MGKSPGKWIKTVLFGKKSSKSNISKGREKLVNQKEGVVTSKVSETDLALDPTPDTVAKNEEELVLENNESEVILNENQEINTVGSVLQDSPPDPEKIKLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMYGIIKLQAVVRGRKVRHSVIGFEIQEKCNLLKSPDGKPVKPIAVPTKITSLSANAFIRKRLASSTTIMALHLQYVPGDPNSVLSWLERWSATNFWKPVPQPKKIRDTKHQRKQGSVGEAPLSKSRRTTRKVPSASFDPAPVQANPELEKPKRSLRKISTQPSDTLQENPQSELEKVKRNLRKVHNPVVENTAVPEVEPEAPKQHLEKAAFALVHGVSELGVISSDEKINKEPTLSISNVPDVEPTSTNSTKEVSDMPSNYQVVVQSKPLTEIISKDENIAEDEVKIEAKDLPETSCKVENSHITNGDLSHKEDPVGTENQKPNRKASNVAKQERAENGLQNSPTLPSYMAATESAKAKLRAQGSPRLANDGSEKNNAARRHSLPSSTNTKISSQSPRTQRPVHSGGKGSNKPVSSTREGNGKVIQAEWRR 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211765g00004 578 Gene3D - 97 145 - -
Stsc211765g00004 578 ProSiteProfiles IQ motif profile. 123 145 IPR000048 GO:0005515
Stsc211765g00004 578 Pfam IQ calmodulin-binding motif 101 120 IPR000048 GO:0005515
Stsc211765g00004 578 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
Stsc211765g00004 578 MobiDBLite consensus disorder prediction 526 569 - -
Stsc211765g00004 578 SMART iq_5 98 120 IPR000048 GO:0005515
Stsc211765g00004 578 SMART iq_5 121 142 IPR000048 GO:0005515
Stsc211765g00004 578 SMART iq_5 151 168 IPR000048 GO:0005515
Stsc211765g00004 578 Pfam Protein of unknown function (DUF4005) 480 559 IPR025064 -
Stsc211765g00004 578 MobiDBLite consensus disorder prediction 380 406 - -
Stsc211765g00004 578 PANTHER IQ-DOMAIN 5-RELATED 1 540 - -
Stsc211765g00004 578 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Stsc211765g00004 578 MobiDBLite consensus disorder prediction 245 319 - -
Stsc211765g00004 578 MobiDBLite consensus disorder prediction 437 578 - -
Stsc211765g00004 578 MobiDBLite consensus disorder prediction 452 467 - -
Stsc211765g00004 578 MobiDBLite consensus disorder prediction 481 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211765g00004 Stsc-Chr211765 20645 26455 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211765g00004 1 578 IQD Protein Family AT1G74690 44.767 2.04e-129 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211765g00004 - - gmx:100807118 806.208