Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211765g00003 ATGTCCAATCCACCTACCTTCTTCACACAGGCTAACGCTCTTCTCCGCAAGAACTTAACTTACCAGAAACGTCACGTCAAGACAAACGTCAGGCTGGTGCTCTTCCCGGTGATCCTCATCCTACTTCTCTTCGCACTCCAAACGGCGCTCGACATCCTCGAGAACGCCGCTGATCGGGAAGACGACAAGAAAAAGGCCGCCGCCTGCAAAGGCTGCGTCTGCGTTCACGACGGCTTGCCTCAATACCAAGACAAGTGCCCGGACTCTGACAAGGTCTGTGCGCCCCAATTCTTGCCGCCCGATGATGCCGAAACGTGCCCGATCTGGAACCCGCTGGAATGGCCTCCCCTCTTGGAACTTGAAATCGGATACGGATTCTGCAGTGGTAATAATGACACCGCCTGTAATGTCACCATGCTCTTCACCGGCACTGATCAATCTTTTGGAGAAAGTTTGTTTGGAACTATGTTCCCAACTAACTTGAGTATAAATGAGTCTGATATCATGGGTAGTTTGGCATCAGTTGTTCTGGGAACTCAATTATCGTTGCCATCAGCTGTTTTTTTGGACCAAGCATTAAGTGTTTACACTTCTGATACCATTTATCAACTACAACAAGATCAGTGTAAGGTGAACTCTAGTTTCTCCTTTAACTTTACCCATGGAGACTCCAAATGGAACCAAGATGTTGAGGTCAAATGTACTCAGTCATTAACCTTATGGCGCAAGAGTTTTTCCGATATATGGGATGAGGTAAAAGGTAAAAATCCTGGTGATTATACAGAAGGAGGTTACATGGTTCACAACAATCCTATAAGTGGAGCTTTTGACTTTCTAAATTCGAATAAGAATATTTATAACGTTAGCTTTCTGACTTACAAAAGTGACAATAGACGTTATATCAGTATGAGCCGCATTACTCGTTCTGTAAATATGTTATCAAATGCCTTCTTGAAGTTTTTGCTGGGAAATGGTACCAAAATGTTATTTGACTTTATAGAGGAAATGCCGAAACCTGCATCCCCAGAAACAGGAAGGATTGATATAACTACTCTACTGGGTGGTTTGTTCTATACATGGGTCATCCTTCAACTTTTTCCTGTTATTCTGATATCACTGGTGTATGAGAAGCAGCACAATATAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGAGCTTATTGGTTGATTTCCTATGGTTATTTTCTTGCCATTTCCATGCTCTACATGCTGTGCTTTGTGTTAGTTGGCTCACTCTTTGGATTCGCTTTCTTCAGAGAGAATGACTATGGAATCCAGTTTGTGTTTTATTTTACCTATGTAAACCTACAAATTGCCTTGGCGTTTCTGGTGGCTGCCCTGTTTTCGAATGTGAAGACTGCTACAGTTACAGCATATTTAGTTGTCTTTGGAACTGGACTGTTAGCTGCCTTTCTTTTCCCAAGTTTTGTACAGAATGATCTGTTTCCAAGAAAATGGGTCATTGTTATGGAGTTGTATCCTGGGTTTGCTTTATTTCGCGGGCTATACGAGTTTGCAGAATATATCACTGATGGAAATAGTTCAGGGACTCCTGGCATGAGGTGGCAGGATCTGAATGATAGCACAAATGGCATGAAACAGATCCTAAATATCATGTCAATTGAGTGGATAGTTTTTCTTCTCGTTGCTTACTACCTTGATCAAGTTTCCTCTTCAGCAAGTGGGAGAAGCCCTCTTTTTTTCTTGGAAGGATTTAAGAAGAAGACACCTTTGTCTTCCCAAAAGGCCAATATGTCAATGCAGGGGTCAAGAGTCCTGGATCAGATGGATAAACCTGATGTAATCCAAGAGAGGGAGAAAGTGGAGCAGCTGCTACTTGAACCGGCCATTAATCACGGTATAGTTTGCAATGAACTGAAAAAAGTCTATCCGGGGAGGGATGGAAATTCGGATAAAGAAGCTGTGAGAGGGTTGTTCCTTGCTGTTCCTCAAGGGGAATGCTTTGGCATGCTTGGTCCCAATGGTGCTGGAAAGACTTCTTTTATTAGTATGATGATTGGTCTGACAAAGCCAACCTCTGGTACTGCATATGTTAAAGGCTTGGACATAAGAACTGATATGAATGGACTATACACTAGCATGGGTGTATGCCCCCAACATGACTTGCTGTGGGAAAGGTTGACAGGAAGAGAGCACCTGCTTTTCTATGGCAGACTTAAAAATCTCAAAGGTTCAGCCTTAACACAGGCAGTAGAAGATTCTCTGAAGAGTTTAAACCTTTTCAATGGAGGAGTTGCTGACAAACAAGCTGGAAAATACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCTTTGATTGGGAATCCCAGTGTTGTTTATATGGATGAACCAAGCACTGGATTAGACCCTGCATCGAGAAAACGCTTATGGGATGTTATTAAGACTGCGAAACAGGATCGTGCAGTCATTCTCACTACTCATTCCATGGAAGAGGCAGAGGCCTTGTGTGATCGACTAGGAATCTTTGTTGATGGTAGCTTGCAATGCATAGGAAATCCAAAGGAGTTGAAAGCAAGATATGGAGGAAGTTATGTGTTGACAATGACAACATCTTTGGAGCACGAAAGTGATGTGCAGAACATGGTGAGGCAGCTATGTCCTAATGCTAAAAAGGTGTACCATATTTCTGGGACTCAGAAGTTTGAGTTGCCTAAGGAGGAGGTTAGAATAGCTGATGTATTTGGAGCCGTTGATTTTGCAAAGAGAAACTTCACTATTTCTGCATGGGGTTTAGCTGACACCACAATGGAAGATGTCTTCATTAAGGTTGCTGGTGGCAACCACCATACTCAAAACCTCTCATAG 2856 0.4282 MSNPPTFFTQANALLRKNLTYQKRHVKTNVRLVLFPVILILLLFALQTALDILENAADREDDKKKAAACKGCVCVHDGLPQYQDKCPDSDKVCAPQFLPPDDAETCPIWNPLEWPPLLELEIGYGFCSGNNDTACNVTMLFTGTDQSFGESLFGTMFPTNLSINESDIMGSLASVVLGTQLSLPSAVFLDQALSVYTSDTIYQLQQDQCKVNSSFSFNFTHGDSKWNQDVEVKCTQSLTLWRKSFSDIWDEVKGKNPGDYTEGGYMVHNNPISGAFDFLNSNKNIYNVSFLTYKSDNRRYISMSRITRSVNMLSNAFLKFLLGNGTKMLFDFIEEMPKPASPETGRIDITTLLGGLFYTWVILQLFPVILISLVYEKQHNIRIMMKMHGLGDGAYWLISYGYFLAISMLYMLCFVLVGSLFGFAFFRENDYGIQFVFYFTYVNLQIALAFLVAALFSNVKTATVTAYLVVFGTGLLAAFLFPSFVQNDLFPRKWVIVMELYPGFALFRGLYEFAEYITDGNSSGTPGMRWQDLNDSTNGMKQILNIMSIEWIVFLLVAYYLDQVSSSASGRSPLFFLEGFKKKTPLSSQKANMSMQGSRVLDQMDKPDVIQEREKVEQLLLEPAINHGIVCNELKKVYPGRDGNSDKEAVRGLFLAVPQGECFGMLGPNGAGKTSFISMMIGLTKPTSGTAYVKGLDIRTDMNGLYTSMGVCPQHDLLWERLTGREHLLFYGRLKNLKGSALTQAVEDSLKSLNLFNGGVADKQAGKYSGGMKRRLSVAISLIGNPSVVYMDEPSTGLDPASRKRLWDVIKTAKQDRAVILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVLTMTTSLEHESDVQNMVRQLCPNAKKVYHISGTQKFELPKEEVRIADVFGAVDFAKRNFTISAWGLADTTMEDVFIKVAGGNHHTQNLS 951
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc211765g00003 951 Pfam ABC-2 family transporter protein 343 560 IPR013525 GO:0016020|GO:0140359
Stsc211765g00003 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 630 861 IPR027417 -
Stsc211765g00003 951 Pfam ABC transporter 655 795 IPR003439 GO:0005524
Stsc211765g00003 951 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 606 944 IPR026082 GO:0016020|GO:0055085|GO:0140359
Stsc211765g00003 951 SMART AAA_5 659 842 IPR003593 GO:0016887
Stsc211765g00003 951 Gene3D - 622 894 IPR027417 -
Stsc211765g00003 951 CDD ABC_subfamily_A 629 854 - -
Stsc211765g00003 951 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 629 866 IPR003439 GO:0005524
Stsc211765g00003 951 ProSitePatterns ABC transporters family signature. 768 782 IPR017871 GO:0005524|GO:0016887
Stsc211765g00003 951 FunFam ABC transporter A family member 7 618 894 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc211765g00003 Stsc-Chr211765 11712 17684 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211765g00003 633 877 Calmodulin-binding Proteins AT2G36910 25.385 3.21e-14 75.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211765g00003 - - gmx:100805474 1147.88