Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211763g00006 ATGGCTCTTGCAACAGATTTCCATACAAAACTACTTGATGATGAACACCTCAACCTGACCCAAGTTGAGAAACAAGAAGATGAACAAGATGGCTTCTTGTTTGCTGAAATGGCATGGTCAAATGTGGTTCCAATGGCTTTGAAGACCACAATAGAGCTTGGTGTATTTGACATAATAGCCAAAGAAGGTGACGGTGCAAAGCTCTCAGCAAAAGACATTGTGGACCAAATAATTGAAACCAACAACCCTGAAGCTGCAACAATGTTGGATCGTGTTCTTAGGCTTCTTGCAAGCCACTCATTACTGTGTTGTTCTGTTGCTGATGATGATCCACAAAACTCAAATAACCTGCATCAGAGGATGTATAGCCTCTCACCTGTTTCTAAATATTTTGTGACTGATGCTGATGGTGTGTCTTTGGGACCCCATTGTTACTGTCTCTGGATAAAATCTACTATCAAAGCTGGTGTGGAGCACTTTGGAGGAGATATGTTTGAAAGTGTTCCTAATGGAGATGTCATTTTAATAAAGCATGTCCTCTATGATTGGGATGATGAAAACTGCTTGAAGGTCTTAAAGAATTGTCACAAGGCAATTCCCAATGATGGAAAGGTGATTGTGGTGGAAAGCATTCTTCCTAATGTGCCTGAACCAACTGCTGCTAATGCCAAGAAGGCCTTTCTATTGGATGTTTCCATGATGACTCATACTCTAAGAGGAAAGGAACGAACCCAGCAAGATTTCATGGACTTGGCCAAAGGATCTGGATTCACTTCCATAAAATTTGTTGTTTGTTTCTCCTGTGTATGGGTCATGGAGTTCTATAAGTAG 831 0.4091 MALATDFHTKLLDDEHLNLTQVEKQEDEQDGFLFAEMAWSNVVPMALKTTIELGVFDIIAKEGDGAKLSAKDIVDQIIETNNPEAATMLDRVLRLLASHSLLCCSVADDDPQNSNNLHQRMYSLSPVSKYFVTDADGVSLGPHCYCLWIKSTIKAGVEHFGGDMFESVPNGDVILIKHVLYDWDDENCLKVLKNCHKAIPNDGKVIVVESILPNVPEPTAANAKKAFLLDVSMMTHTLRGKERTQQDFMDLAKGSGFTSIKFVVCFSCVWVMEFYK 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211763g00006 276 SUPERFAMILY "Winged helix" DNA-binding domain 25 134 IPR036390 -
Stsc211763g00006 276 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 276 IPR016461 GO:0008168
Stsc211763g00006 276 FunFam Caffeic acid 3-O-methyltransferase 13 131 - -
Stsc211763g00006 276 PANTHER O-METHYLTRANSFERASE 37 135 IPR016461 GO:0008168
Stsc211763g00006 276 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 155 275 IPR029063 -
Stsc211763g00006 276 Gene3D Vaccinia Virus protein VP39 142 276 IPR029063 -
Stsc211763g00006 276 Gene3D - 13 131 IPR036388 -
Stsc211763g00006 276 Pfam Dimerisation domain 45 97 IPR012967 GO:0046983
Stsc211763g00006 276 Pfam O-methyltransferase domain 151 257 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211763g00006 Stsc-Chr211763 48295 51285 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211763g00006 156 275 Monolignol Biosynthesis Gene Families AT1G51990 46.667 3.67e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211763g00006 K13066 - aip:107606823 338.961