Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211763g00003 ATGGCTCTTGAATCAGATTTGGATGCAAAACTACTTGATGATGATGAGCGCCTCAACCTGCCCCAAGTTGAGAAACAAGAAGATGAACAAGATGACTTGTTTGCTGAAATGGCTTGGTCAAGTGTGATCAATATGACTTTGAAGACCACAATAGAGCTTGGTGTATTTGACATCATAGTCAAAGTAGGGGAAGGTGCAAAGCTTTCAGCAAAAGACATTGTGGATCAAATTGAAACCAACAATCCTGAAGCAGCAACAATGTTGGATCGTGTTCTTAGACTTCTTGCAAGTCACTCATTACTGTGTTGTTGTGTTGTTGAAGATCCAAAAAATGTTAACTTGCATCAGAGGCTGTATAGTCTCTCACCTTGTTCCAAATGTTTTGTGACCGATGCTGACGCGTCTTTGGGACCCTCAGTGGTGCTGTCTCTGGATAAAGTCTTCTACCAAATCTGGAGTGAATTGAAAAGAGCAATTCTGGAAGGAGGGATACCATTCAATATGGCTCATGGCATGCAAATCTTTGATTATACAAAGATTGATGCTAGGTTTAACAAGATTTTCAGCAAAGCGATGCACAACCTCTCCACTATAGTAATGAAGAGGATTCTTGACGTCTACAAAGGCTTTGAGCACATAAATAAACTAGTAGATGTTGGTGGAGATATGTTTGAAAGTGTTTCAAATGGAGATGCCATTTTAATGAAGCATATCATCCATGATTGGGATGATGAAGAGTGCTTGAAGATCTTAAAGAATTGTCACAAGGCCATTCCCAATGATGGAAAGGTGATTGTGGTGGACAACATTCTTCCTAATGTGCCTGAGCCAACAGCTATTGCCAAAAACACATTTAAATTTGATGTTGTCATGATGACTCAGATGTCAAGAGGAAAGGAACGAACCAAGCAAGATTTCATGGACTTGGCTAAAGGATCTGGATTCACTTCCATAAAATTTGTGTGTTGTCTCTCTTGCATATGGGTCATGGAGTTCTATAAGTAG 1005 0.398 MALESDLDAKLLDDDERLNLPQVEKQEDEQDDLFAEMAWSSVINMTLKTTIELGVFDIIVKVGEGAKLSAKDIVDQIETNNPEAATMLDRVLRLLASHSLLCCCVVEDPKNVNLHQRLYSLSPCSKCFVTDADASLGPSVVLSLDKVFYQIWSELKRAILEGGIPFNMAHGMQIFDYTKIDARFNKIFSKAMHNLSTIVMKRILDVYKGFEHINKLVDVGGDMFESVSNGDAILMKHIIHDWDDEECLKILKNCHKAIPNDGKVIVVDNILPNVPEPTAIAKNTFKFDVVMMTQMSRGKERTKQDFMDLAKGSGFTSIKFVCCLSCIWVMEFYK 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211763g00003 334 PANTHER O-METHYLTRANSFERASE 37 221 IPR016461 GO:0008168
Stsc211763g00003 334 Pfam Dimerisation domain 45 96 IPR012967 GO:0046983
Stsc211763g00003 334 Gene3D Vaccinia Virus protein VP39 221 323 IPR029063 -
Stsc211763g00003 334 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 214 334 IPR016461 GO:0008168
Stsc211763g00003 334 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 135 332 IPR029063 -
Stsc211763g00003 334 Gene3D Vaccinia Virus protein VP39 130 220 IPR029063 -
Stsc211763g00003 334 Gene3D - 15 127 IPR036388 -
Stsc211763g00003 334 SUPERFAMILY "Winged helix" DNA-binding domain 32 131 IPR036390 -
Stsc211763g00003 334 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 35 213 IPR016461 GO:0008168
Stsc211763g00003 334 PIRSF O-mtase 14 221 IPR016461 GO:0008168
Stsc211763g00003 334 PIRSF O-mtase 219 334 IPR016461 GO:0008168
Stsc211763g00003 334 FunFam Caffeic acid 3-O-methyltransferase 14 128 - -
Stsc211763g00003 334 Pfam O-methyltransferase domain 219 315 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211763g00003 Stsc-Chr211763 28680 31929 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211763g00003 28 334 Monolignol Biosynthesis Gene Families AT5G54160 40.395 1.10e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211763g00003 K13066 - gmx:100789402 353.599