Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211763g00001 ATGGCTCTTGAATCAGATTTGGATGCAAAACTAATTGATGATGAGCGCCTCAACCTGCCCCAAGTTGAGAAGCAAGAAGATGAAAAAGAAGGAGGCTTCTTGTTTGCTGACATCGTATGGTCAAATGTGATCAATATGGCTTTGAAGACCACAATAGAGCTTGGTGTATTTGACATCATAGTCAAAGCAGGTGAAGATGCAAAGCTCTCAGCAAAAGACATTGCGGATAAAATTGGAACCAACAACCCTGAAGCACCAACAATGTTGGATCGTCTTCTTAGGCTTCTTGCAAGTCATTCATTACTGTGTTGTTGTGTTGTTGAAGATCCACAAAATAGTAACTTGCATCAGAGGCTATCCCAAAAAGATCTCAACTACCCACAACTATATAAGCAGGGGGCATCACCCCCTCAAGACTATTCACCTCCACAACAACCCCTTCTCGACTATAACTCTCGGCCACGCCGTAGGGTTTGTCATCGAAGGCACACCTTCTTGTCCCAAACCTCGTATCTCGACCCCCTTTTGAAGTCCTTTGGACAATCGTTGAGGATTCGACCTCAACATTGGCGCCGTCTGTGGGGACACTCCGAGACCGAGGAGCAAGAAGCGCAGGCATCGGAGATCGACCAGAGGAACAACACAATCCAACAGTTGGAAGCGGCTCTTAGAGAACTCCTAGAAAGGCAAACCCGAGAAGCGGCACTGGCCTCGAAAGCCGTAAAAAGAGCAGAAGAGCTCACCCGGAAGCAGCAGGCCATCCTGGACGAGGCGGAAAAGCGAGAAAAAGACAGGCTCGAAAAGCTCGAAAAGCTTAACAGTAAAACTCAGACCGCAGCAGACCACAATAGCAAGACGGCGGAATCAAAGGATCGCACGTGGAGACCATCCACTGTGATAACACGGGCCCCCGGAAAGAAGGGAACAAGCACCCATTCTCAGCTCACATCTTGGCGGAAGAAATCCCCAAGAAGTTCAGATACCCCATGGAAATCGAACCCCCAGTTCTTGAACGAAGTATCTCAGGTCGAGAGGGTACCAGCTCCAAGACCCATAAAGAACACCAGCAGAGGAGACCGACGCTCGTACTGTAAGTACCACAAACAGCATCGGCACGACACGGAGGAGTGTCGCGACCTCCTCGACTTCATCGAGGAAGGGCTAAAAAACGGAAGATTCCGCGAATACACTAGCAGGAACAGAAACAAAGATGATGAACGAAGGGTCAGGCAGAGACAGAACAGCCCGGAAACCAAAGCGGAGAGAAGAAGGGATGAACCCAAAGAGCGCAACGCGCACCGCGAGATAGCAATGATCTCCGGAGGGATCCCAGATGAAGGAAACCCCCCGTCTAAGAAGGTGGCAAAACGAAATAAGCACTCATGCCTGGCGGTGGAGGTCATGCCTATACCCTAG 1416 0.4979 MALESDLDAKLIDDERLNLPQVEKQEDEKEGGFLFADIVWSNVINMALKTTIELGVFDIIVKAGEDAKLSAKDIADKIGTNNPEAPTMLDRLLRLLASHSLLCCCVVEDPQNSNLHQRLSQKDLNYPQLYKQGASPPQDYSPPQQPLLDYNSRPRRRVCHRRHTFLSQTSYLDPLLKSFGQSLRIRPQHWRRLWGHSETEEQEAQASEIDQRNNTIQQLEAALRELLERQTREAALASKAVKRAEELTRKQQAILDEAEKREKDRLEKLEKLNSKTQTAADHNSKTAESKDRTWRPSTVITRAPGKKGTSTHSQLTSWRKKSPRSSDTPWKSNPQFLNEVSQVERVPAPRPIKNTSRGDRRSYCKYHKQHRHDTEECRDLLDFIEEGLKNGRFREYTSRNRNKDDERRVRQRQNSPETKAERRRDEPKERNAHREIAMISGGIPDEGNPPSKKVAKRNKHSCLAVEVMPIP 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211763g00001 471 Coils Coil 209 279 - -
Stsc211763g00001 471 PANTHER O-METHYLTRANSFERASE 42 161 IPR016461 GO:0008168
Stsc211763g00001 471 MobiDBLite consensus disorder prediction 270 360 - -
Stsc211763g00001 471 Pfam Dimerisation domain 46 97 IPR012967 GO:0046983
Stsc211763g00001 471 MobiDBLite consensus disorder prediction 303 340 - -
Stsc211763g00001 471 MobiDBLite consensus disorder prediction 130 152 - -
Stsc211763g00001 471 MobiDBLite consensus disorder prediction 395 435 - -
Stsc211763g00001 471 FunFam Caffeic acid 3-O-methyltransferase 15 120 - -
Stsc211763g00001 471 Gene3D - 17 121 IPR036388 -
Stsc211763g00001 471 MobiDBLite consensus disorder prediction 130 148 - -
Stsc211763g00001 471 SUPERFAMILY "Winged helix" DNA-binding domain 30 113 IPR036390 -
Stsc211763g00001 471 MobiDBLite consensus disorder prediction 395 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211763g00001 Stsc-Chr211763 830 3215 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211763g00001 23 113 Monolignol Biosynthesis Gene Families AT1G77530 44.086 1.91e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211763g00001 - K13066 aip:107606823 127.487