Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211762g00013 ATGTCATTCCGAAGCATAGTTCGAGATGTGAGGGGTAGTTTTGGGAGCTTGTCTATGAGGAGTTTTGATGTTANNNNNNNNNNTGGTCATCATAGAGGAAAATCTCATGGGTCTGTACAAGATTTGCATGACCAGCCTTTCGTTGTTCAAAGTAGTTGCTGGGCTAGCTTGCCCCCGGAATTATTATATGATGTCATTAAAAGACTGGAGGAGAGCGAGAGTACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCAGTGTGCCGGTCTTGGAGGAGTATGTGCAAGGAAATTGTGAAGAGTCCAGAGTTGTGTGGCAAACTTACGTTTCCTGTGTCCTTGAAGCAGCCAGGACCACGTGATGGGATGGTTCAATGTTTTATCAAGAGAGATAAATCAAGTTTAACATACCGCCTATTCCTTTGTCTCAGCCCTGCTTTGCTAGTTGAAAATGGGAAATTCCTCCTTTCTGCCAAGAGGACTAGGAGAACAACTTACACAGAGTATGTCATTTCGATGGACGCTGGCAACATATCTAGATCAAGTAGCACTTACATTGGGAAGCTGAGATCGAACTTTCTTGGCACGAAATTCATCATATATGATACACAACCTCCATACAATACTGCCAATGTACCACCTCCAGGGGTTGGGAGAACAAGCCGCAGATTTTATTCCAAGAAGGTCTCACCGAAGGTCCCGTCTGGGAGTTACAACATAGCTCAGGTGACATATGAATTGAATGTGCTTGGCACGAGAGGCCCCAGGAAGATGCATTGTGTTATGCATTCAATACCGATGTCAGCACTTGATGAGGGTGGCAGTGTTCCTGGTCAACCAGAGCTTCTTCCTCGCGCCTTGGAGGACTCATTCCGAAGCATCTCCTTTTCGAAGTCCCTAGATCGCTCTATCGAGTTCAGCAGTGCTCGATTTTCTGAGATTGGGGGATCCTCCAATGAAGATGAAGATGACAAGACAAGGCCCTTGGTTCTGAAAAACAAGCCTCCAAGATGGCATGAACAATTACAATGTTGGTGCCTTAATTTCCGGGGAAGGGTAACAGTTGCATCTGTAAAAAACTTTCAGCTGATTGCTGCAATGCCGCCACCTGCCGGTGCGCCGACACAATCTCAGCCTGCCCCACCGGAGCACGACAAGGTAATTCTGCAGTTCGGCAAAGTCGGAAAAGATATGTTCACAATGGATTATAGGTATCCGCTATCAGCATTCCAGGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAA 1287 0.4584 MSFRSIVRDVRGSFGSLSMRSFDVXXXXGHHRGKSHGSVQDLHDQPFVVQSSCWASLPPELLYDVIKRLEESESTWPARKHVVACAAVCRSWRSMCKEIVKSPELCGKLTFPVSLKQPGPRDGMVQCFIKRDKSSLTYRLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDAGNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNTANVPPPGVGRTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCVMHSIPMSALDEGGSVPGQPELLPRALEDSFRSISFSKSLDRSIEFSSARFSEIGGSSNEDEDDKTRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAMPPPAGAPTQSQPAPPEHDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211762g00013 428 CDD F-box_AtTLP-like 54 98 - -
Stsc211762g00013 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
Stsc211762g00013 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Stsc211762g00013 428 PANTHER TUBBY-RELATED 34 426 - -
Stsc211762g00013 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Stsc211762g00013 428 SUPERFAMILY F-box domain 50 98 IPR036047 GO:0005515
Stsc211762g00013 428 FunFam Tubby-like F-box protein 111 428 - -
Stsc211762g00013 428 FunFam Tubby-like F-box protein 49 102 - -
Stsc211762g00013 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Stsc211762g00013 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Stsc211762g00013 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Stsc211762g00013 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Stsc211762g00013 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Stsc211762g00013 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Stsc211762g00013 428 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Stsc211762g00013 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Stsc211762g00013 428 Pfam Tub family 115 423 IPR000007 -
Stsc211762g00013 428 Pfam F-box domain 54 101 IPR001810 GO:0005515
Stsc211762g00013 428 Gene3D - 49 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211762g00013 Stsc-Chr211762 45135 49025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211762g00013 1 428 TUB Transcription Factor Family AT1G76900 69.612 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Stsc211762g00013 Tub 1.5e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211762g00013 K19600 - gmx:100814578 765.763