Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211762g00012 ATGGTGTCTGCGCAGATAGCACTTGCGGCTGTGAATATTTTGTACAAGATGGCCATCAATGACGGAATGAACATGAGAGTTGCCACTGCTTATCGCCTCATCTTTGCATCTGTCTTCGCCATCCCTGTTGCTATCATTTTTGACAGAAAGAATAAGAAGAATAAAGCAAAGATTACTCCTAGAGTGCTTCTTCTGGAATTTCTTTGTGCATTGTTTGGAGGAACTTTATGTCTCAACTTTTATTTTGCGGCAATGCCTTTGATGCCAGCAACGTTTGTGTTGGCCATCGTTAATCTTTCTCCGGCTCTCACCTTCATCATAGCCATAACCACGGGTTTGGAAAAATTGAACTTGGGAGCCGCAGCAGGGAAGGCCAAGGTAATAGGAACAGTAACAGGAATAAGTGGTGCAATGGTGTTGACCTTCTACAAAGGCATACAAATTGATGTTTGGTCTTCTTATTCCCGGATCAACCTCTTGCATCACCCACATGGCGGCGTTCATAATGGTAACAAATTATTGGGTTTTTCGTATGCAATTGCAAGCTGCTGCTCTTATGCATTGTGGCTCAACATTCAGGCTAAGGTGAATCAAGAATTTCCAAGGCACTACACTGGCACTGCTCTAATGTGCTCAATGGCTGCACTACAATCCACTGTCTTTGCTCTGTTTGTTGATAGGGATTGGGCCTCCCAATGGAAGCTGTCTTGGAATATCAGGCTCCTCACTGTTTCTTATGCTGGAATTGTGGCGTCTGGAATTGTGATTAATATTATTGCATGGTGTGTACATATGAGAGGCCCTTTATTTGGGTGTATTTTCAATCCTCTACAGCTTGTGCTTGTGGCTATCGCTGCTTCCTTCACGTTGGATGAGCATTTATATTTAGGAAGTGTGATTGGAGGAGTGTTGATAGTGAGTGGGCTATACTCAGTGCTATGGGGGAACAGCACAGAAACCAAACACAAGATTCAAGATCAGACTCAGTTATTAGAAGAAATCACAAGAGATGCTACTGTTCAAATTTCATTTGTGGCGGTGAATATTTTGTACAAGATGGCCATTAATGATGGAATGAGCATGAGAGTTGCCACTGCTTATCGCCTCATCTTTGCTTCTGCCTTCACTATCCCCATTGCTATCATTTTTGACACCAACAATAAGAAGAACAAAGCAAAGATTACTCCAAGGGTGCTTCTTTTGGAATTTCTTTGTGGATTGTTTGGAGGAACTTTATTCCTCAACTTTTACTTCGCCGCATTGGCTTTGATGCCAGCAACGTTTGTGTTGGCCATCATCAATCTTTGTCCAGCTGTCACCTTCATCATCGCCATAACCTCCGGTTTGGAAAAATTGAACTTGGGAGCAGCAGCAGGGAAGGCCAAGGTAATAGGAACAATAACAGGAATCAGTGGTGCAATGGTGTTGACCTTCTACAAAGGCATACGAATTGATACTTGGTCTTCCCATATCAACCTCTTGCATCATCCGCATGGCGGTGCTGATAATGGTAACAAATTATTGGGTTTTTCATATGCAATTGCAAGCTGCAGCTCTTTTGCATTGTGGCTCAACATTCAGGCTAAGGTGAATCAAGAATTTCCAAGGCACCACACTGGCACTGCTCTAATGTGTTCAATGGCTGCACTGCAATCCACTGTCTTTGCTCTGTTTGTTGATAGGGATTGGGCCTCCCAGTGGAAGCTGTCTTGGAATATCAGGCTCCTCACTGTTTCTTATGCTGGAATTGTGGCATCTGGACTAGTTGTTAATATTATTGCATGGTGTGTACATAAGAGAGGTCCTCTATTTGGGTCAATTTTCAATCCTCTGCAGCTTGTGCTTGTGGCAATCGCTGCTTCCTTCTTGTTGAATGAGCATTTATATTTAGGAAGTGTGATTGGAGGAGTGTTGATAGTGAGTGGGCTATACTCAGTGCTATGGGGGAACAGCACAGAAACCAAACACAAGATTCAAGATCAGACTCAGTTATTAGAAGAAATCACAAGAGATGCTACTGTTCAAGTGATTGTTATGTCTCCACAGAAAGAACAACAAAACAAGGACAACAAAACTCATCATCATCAAATTCAAAACCCCCTTTCTAATGAACAACAATTCCCCCCTCCTCATAATAATAATAATAATAATAATGGGGGGAAATAA 2166 0.4234 MVSAQIALAAVNILYKMAINDGMNMRVATAYRLIFASVFAIPVAIIFDRKNKKNKAKITPRVLLLEFLCALFGGTLCLNFYFAAMPLMPATFVLAIVNLSPALTFIIAITTGLEKLNLGAAAGKAKVIGTVTGISGAMVLTFYKGIQIDVWSSYSRINLLHHPHGGVHNGNKLLGFSYAIASCCSYALWLNIQAKVNQEFPRHYTGTALMCSMAALQSTVFALFVDRDWASQWKLSWNIRLLTVSYAGIVASGIVINIIAWCVHMRGPLFGCIFNPLQLVLVAIAASFTLDEHLYLGSVIGGVLIVSGLYSVLWGNSTETKHKIQDQTQLLEEITRDATVQISFVAVNILYKMAINDGMSMRVATAYRLIFASAFTIPIAIIFDTNNKKNKAKITPRVLLLEFLCGLFGGTLFLNFYFAALALMPATFVLAIINLCPAVTFIIAITSGLEKLNLGAAAGKAKVIGTITGISGAMVLTFYKGIRIDTWSSHINLLHHPHGGADNGNKLLGFSYAIASCSSFALWLNIQAKVNQEFPRHHTGTALMCSMAALQSTVFALFVDRDWASQWKLSWNIRLLTVSYAGIVASGLVVNIIAWCVHKRGPLFGSIFNPLQLVLVAIAASFLLNEHLYLGSVIGGVLIVSGLYSVLWGNSTETKHKIQDQTQLLEEITRDATVQVIVMSPQKEQQNKDNKTHHHQIQNPLSNEQQFPPPHNNNNNNNGGK 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211762g00012 721 SUPERFAMILY Multidrug resistance efflux transporter EmrE 31 133 - -
Stsc211762g00012 721 MobiDBLite consensus disorder prediction 682 721 - -
Stsc211762g00012 721 PANTHER WAT1-RELATED PROTEIN 339 660 IPR030184 GO:0016020|GO:0022857
Stsc211762g00012 721 SUPERFAMILY Multidrug resistance efflux transporter EmrE 221 317 - -
Stsc211762g00012 721 SUPERFAMILY Multidrug resistance efflux transporter EmrE 555 651 - -
Stsc211762g00012 721 SUPERFAMILY Multidrug resistance efflux transporter EmrE 367 475 - -
Stsc211762g00012 721 MobiDBLite consensus disorder prediction 696 721 - -
Stsc211762g00012 721 Pfam EamA-like transporter family 508 647 IPR000620 GO:0016020
Stsc211762g00012 721 Pfam EamA-like transporter family 343 476 IPR000620 GO:0016020
Stsc211762g00012 721 Pfam EamA-like transporter family 174 313 IPR000620 GO:0016020
Stsc211762g00012 721 Pfam EamA-like transporter family 6 140 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211762g00012 Stsc-Chr211762 36810 43588 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211762g00012 331 655 Nodulin-like Gene Family AT1G25270 39.634 1.31e-76 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211762g00012 - - mtr:25493310 687.952