Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc211762g00003 | ATGTCTGACGTGGAAGAATTTCGCTGCTTCATTGGCGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAAGATACATTTGAAAAGTTTGGCAAGCTTGTTGAAGCAAAGGTGGTTGTAGACAAATTCTCTGGGCGCTCGCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATCGATGCTATGAATGGCATGGATTTAGATGGGCGAACTATCACTGTTGATAAAGCTCAGCCTCAGCAAGGATCGGGTAGAGATGATGGTGACCGCCACCGTGACCGTGGTCGAGATCGTGATCGTGATCGTGGTCGCGATCGTGACAGAGATTATGGAGGTGGTCGAGGATCTAATGGTGGTGAATGCTTTAAATGTGGTAAACCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGCGGAAGAGGGGGAAGGTATGGTGGCAGGGAAGGTGGTAGATATGGTGGAAGCAGTGGTTATGGTCCTGACAGAAATGCAGATCGTTCTTCCGGTGGACGCAGCAGGGATGGTGGCAGGGATGGAGGCAGGGATGGAGATTCAGGAAACGATCGATACTATCGTGATCGGGCTGGACCATATGAACGACGGGGATCGGGAGGTGCTCGTTAA | 642 | 0.4922 | MSDVEEFRCFIGGLAWSTSDRKLKDTFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGMDLDGRTITVDKAQPQQGSGRDDGDRHRDRGRDRDRDRGRDRDRDYGGGRGSNGGECFKCGKPGHFARECPSEGGRGGRYGGREGGRYGGSSGYGPDRNADRSSGGRSRDGGRDGGRDGDSGNDRYYRDRAGPYERRGSGGAR | 213 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc211762g00003 | 213 | CDD | RRM2_NsCP33_like | 8 | 83 | - | - | |
Stsc211762g00003 | 213 | Gene3D | - | 2 | 103 | IPR012677 | - | |
Stsc211762g00003 | 213 | Gene3D | - | 118 | 179 | - | - | |
Stsc211762g00003 | 213 | Pfam | Zinc knuckle | 126 | 142 | IPR001878 | GO:0003676|GO:0008270 | |
Stsc211762g00003 | 213 | SUPERFAMILY | Retrovirus zinc finger-like domains | 109 | 146 | IPR036875 | GO:0003676|GO:0008270 | |
Stsc211762g00003 | 213 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 85 | IPR000504 | GO:0003723 | |
Stsc211762g00003 | 213 | FunFam | Glycine-rich RNA-binding protein RZ1A | 1 | 122 | - | - | |
Stsc211762g00003 | 213 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 10 | 79 | IPR000504 | GO:0003723 | |
Stsc211762g00003 | 213 | ProSiteProfiles | Zinc finger CCHC-type profile. | 127 | 142 | IPR001878 | GO:0003676|GO:0008270 | |
Stsc211762g00003 | 213 | SMART | rrm1_1 | 8 | 81 | IPR000504 | GO:0003723 | |
Stsc211762g00003 | 213 | SMART | c2hcfinal6 | 126 | 142 | IPR001878 | GO:0003676|GO:0008270 | |
Stsc211762g00003 | 213 | MobiDBLite | consensus disorder prediction | 88 | 119 | - | - | |
Stsc211762g00003 | 213 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 116 | IPR035979 | GO:0003676 | |
Stsc211762g00003 | 213 | PANTHER | GLYCINE-RICH RNA-BINDING PROTEIN RZ1A | 1 | 210 | - | - | |
Stsc211762g00003 | 213 | MobiDBLite | consensus disorder prediction | 76 | 213 | - | - | |
Stsc211762g00003 | 213 | MobiDBLite | consensus disorder prediction | 172 | 206 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc211762g00003 | Stsc-Chr211762 | 11090 | 14262 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc211762g00003 | 9 | 84 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 36.842 | 3.45e-07 | 48.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc211762g00003 | - | - | gmx:100815224 | 264.233 |