Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211762g00003 ATGTCTGACGTGGAAGAATTTCGCTGCTTCATTGGCGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAAGATACATTTGAAAAGTTTGGCAAGCTTGTTGAAGCAAAGGTGGTTGTAGACAAATTCTCTGGGCGCTCGCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATCGATGCTATGAATGGCATGGATTTAGATGGGCGAACTATCACTGTTGATAAAGCTCAGCCTCAGCAAGGATCGGGTAGAGATGATGGTGACCGCCACCGTGACCGTGGTCGAGATCGTGATCGTGATCGTGGTCGCGATCGTGACAGAGATTATGGAGGTGGTCGAGGATCTAATGGTGGTGAATGCTTTAAATGTGGTAAACCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGCGGAAGAGGGGGAAGGTATGGTGGCAGGGAAGGTGGTAGATATGGTGGAAGCAGTGGTTATGGTCCTGACAGAAATGCAGATCGTTCTTCCGGTGGACGCAGCAGGGATGGTGGCAGGGATGGAGGCAGGGATGGAGATTCAGGAAACGATCGATACTATCGTGATCGGGCTGGACCATATGAACGACGGGGATCGGGAGGTGCTCGTTAA 642 0.4922 MSDVEEFRCFIGGLAWSTSDRKLKDTFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGMDLDGRTITVDKAQPQQGSGRDDGDRHRDRGRDRDRDRGRDRDRDYGGGRGSNGGECFKCGKPGHFARECPSEGGRGGRYGGREGGRYGGSSGYGPDRNADRSSGGRSRDGGRDGGRDGDSGNDRYYRDRAGPYERRGSGGAR 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211762g00003 213 CDD RRM2_NsCP33_like 8 83 - -
Stsc211762g00003 213 Gene3D - 2 103 IPR012677 -
Stsc211762g00003 213 Gene3D - 118 179 - -
Stsc211762g00003 213 Pfam Zinc knuckle 126 142 IPR001878 GO:0003676|GO:0008270
Stsc211762g00003 213 SUPERFAMILY Retrovirus zinc finger-like domains 109 146 IPR036875 GO:0003676|GO:0008270
Stsc211762g00003 213 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Stsc211762g00003 213 FunFam Glycine-rich RNA-binding protein RZ1A 1 122 - -
Stsc211762g00003 213 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Stsc211762g00003 213 ProSiteProfiles Zinc finger CCHC-type profile. 127 142 IPR001878 GO:0003676|GO:0008270
Stsc211762g00003 213 SMART rrm1_1 8 81 IPR000504 GO:0003723
Stsc211762g00003 213 SMART c2hcfinal6 126 142 IPR001878 GO:0003676|GO:0008270
Stsc211762g00003 213 MobiDBLite consensus disorder prediction 88 119 - -
Stsc211762g00003 213 SUPERFAMILY RNA-binding domain, RBD 4 116 IPR035979 GO:0003676
Stsc211762g00003 213 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 210 - -
Stsc211762g00003 213 MobiDBLite consensus disorder prediction 76 213 - -
Stsc211762g00003 213 MobiDBLite consensus disorder prediction 172 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211762g00003 Stsc-Chr211762 11090 14262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211762g00003 9 84 Eukaryotic Initiation Factors Gene Family AT4G34110 36.842 3.45e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211762g00003 - - gmx:100815224 264.233