Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211760g00007 ATGACGAGTCCGGTTTTCAGTACCTTGCCCGGCAATGTGTTAACCGGTTCTGGTATTGATGAAAACTCAAACCAATTTTCTGGAAAAACTATTCGGAGTGCTGTTCTTGCACTGCCTGCCCCATCTCAGCGTGATTTGAAAAAGAGTTGTCAAACTGCAGAAGGTTCATGCTCCCATCAGAGTACCTCAGAACAAGACCCCTCTCATTTGTCTAATGACAAATCAGAGATCAAATGTCAGCCTTGCTCTCAAAATGTCCGAAACATGTCTGTGGAAAAAAATAATTCTGTAACTGGCTCTCTTGTTAAGAACCCAATGTTATCTGTTCCTGCACAAGTGAACAACACTTCTGCAAATGGACTACAGGACCCAGCTCCAGAATCTGGAGATGTGGAAAATACAAGTTTGAATTGTTCAGAAAGAAACTCTAAAGCCACAACATCTACACAGTCGAGCTGCAAGGGTAAAAAAAGCTCAAAATTATTAAAGAAGAAGTATATTCTAAGGTCATTAGGAAGCAGCGATAGAGCTTTGCGGTCAAGGACACGTGAAAAACCTAAACCACCTGAGTCAAATAGCATTTTGGTTGATGTTAATAATGATGGAGTGAAGAATAAAAGGGGGAGGAAGAAGAAGAAAAAGAGTGGAGGGGAGGAAGTTATTGATGAATTTTCTAGAATAAGAGCTCGCTTAAGATATTTATTGAGCCGAGTTAGATATGAGCAGAACTTGATTGATGCTTATTCTCATGAAGGCTGGAAAGGATACAGTTTGGATAAGTTAAAGCCTGAAAAGGAGCTTCAACGGGCTAAGACTGAAATACTTCGACGTAAATTGAAAATTAGGGATCTCTTTCGATATTTGGACTCATTATGTGCCGAAGGAAGGCTTCCTGAATCTCTGTTTGATTCTGAAGGAGAGATTGACAGTGAGGATATATTCTGTGCTAAATGTAGTTCCAAAGAGTTGAGCACAAACAATGATATAATTCTCTGTGACGGTGCTTGTGAACGTGGATTTCACCAGCTCTGTTTGGATCCTCCTTTGTTAACTGAAAACATTCCACCTGGTGATGAGGGTTGGCTATGCCCAGCATGTGATTGCAAAGATGACTGTATTGAACTTGTTAATGACACCTTAGGAACACGTCTCTCTCTTGATGACAACTGGGAGAGGGTTTTTCCGGAAGCAGCTGCAGTTGATGCATTTAATGTAGATCACAACTCAGGACTTCCTTCTGATGATTCTGATGATGATGATTACAATCCTGATGTTCAAGAAGATGTGGAGGTTGAAGGGGGTGAGTCAAGTTCTGATGAATCTGAGTATGCTTCTGCTTCTGAGAAACTGGAGGATTCTGGCCCTGAGGATCAATACTTGGGCCTTCCTTCTGAAGATTCTGAAGATGATGATTATGATCCTGATGCTCCAGATCACGACATTAAAGTTGCAGAGGAAAGTTCGAATTCTGATTTCACATCTGACTCTGAGGATCTTGCTGCTACAATTAAAGATAATATGTCCCCTGTACATGGTGAAGATATCACATCGCCTTCATTGGATGGTGCAAAGAAGTTTAAAGGATCTAGCAAAACAAGTAAAGTCGGTAAGAAGCCATCTATAGCTGATGAATTGTCATCTTTACTAGAGGCAGATCCTGGCCAAGAGAGTTACACTCCCTTTTCAGGGAAAAGGAATGTGGAAAGGTTGGACTACAAAAAGCTGTATGATGAGACATACAAAAGTGAGACAAGTGATGATGAAGACTGGAATGCCACCCCTACCCCAAGTAGGAAGAAGAATCTCACTGGTAAATTGACTCCAGTGTCACCAAATAGGAAAGCCGCAGATAATTCTACACATCCTCTGAGAAGTGACGGTAAAGCTGAAAATAACTCAGCTGCTAAATCACTTGAAGGCTCTGAAAAATTCGATTCCGGAGAGAAAAAACGTAGATCTTCAACATACAACAGACTTGGAGATGCTGCAATTCAGAGACTTTACAAATCTTTCAAAGAAAATCAGTATCCAGATCGGGCCACAAAAGAAAGCTTGGCACAAGAAATTGGGCTCACACTTCAGCAGGTAAGTAAATGGTTTGACAACACCCGATGGAGCTTCCGGCATTCATCCCATAAGGAACCCTGGACAGGTGAAAATGCTTCGGATCAGACGGCTAATAGCATAGCTGAAAATGAGGGGACACCTGGTGGAGAGAGGAGGGACAGTGAATTAGTGCCCCAAGAGGACACCAGAGAAAACTCAAAAACCCCAAGCTCTAGAAAAAGAAAGCATATGTCTGAACCCAAGCTCTAG 2316 0.4175 MTSPVFSTLPGNVLTGSGIDENSNQFSGKTIRSAVLALPAPSQRDLKKSCQTAEGSCSHQSTSEQDPSHLSNDKSEIKCQPCSQNVRNMSVEKNNSVTGSLVKNPMLSVPAQVNNTSANGLQDPAPESGDVENTSLNCSERNSKATTSTQSSCKGKKSSKLLKKKYILRSLGSSDRALRSRTREKPKPPESNSILVDVNNDGVKNKRGRKKKKKSGGEEVIDEFSRIRARLRYLLSRVRYEQNLIDAYSHEGWKGYSLDKLKPEKELQRAKTEILRRKLKIRDLFRYLDSLCAEGRLPESLFDSEGEIDSEDIFCAKCSSKELSTNNDIILCDGACERGFHQLCLDPPLLTENIPPGDEGWLCPACDCKDDCIELVNDTLGTRLSLDDNWERVFPEAAAVDAFNVDHNSGLPSDDSDDDDYNPDVQEDVEVEGGESSSDESEYASASEKLEDSGPEDQYLGLPSEDSEDDDYDPDAPDHDIKVAEESSNSDFTSDSEDLAATIKDNMSPVHGEDITSPSLDGAKKFKGSSKTSKVGKKPSIADELSSLLEADPGQESYTPFSGKRNVERLDYKKLYDETYKSETSDDEDWNATPTPSRKKNLTGKLTPVSPNRKAADNSTHPLRSDGKAENNSAAKSLEGSEKFDSGEKKRRSSTYNRLGDAAIQRLYKSFKENQYPDRATKESLAQEIGLTLQQVSKWFDNTRWSFRHSSHKEPWTGENASDQTANSIAENEGTPGGERRDSELVPQEDTRENSKTPSSRKRKHMSEPKL 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211760g00007 771 CDD homeodomain 649 711 IPR001356 GO:0003677
Stsc211760g00007 771 ProSiteProfiles Zinc finger PHD-type profile. 312 369 IPR019787 -
Stsc211760g00007 771 MobiDBLite consensus disorder prediction 595 618 - -
Stsc211760g00007 771 ProSitePatterns Zinc finger PHD-type signature. 315 366 IPR019786 -
Stsc211760g00007 771 MobiDBLite consensus disorder prediction 710 771 - -
Stsc211760g00007 771 Pfam Homeodomain 661 706 IPR001356 GO:0003677
Stsc211760g00007 771 FunFam Homeobox protein HAT3.1 295 374 - -
Stsc211760g00007 771 MobiDBLite consensus disorder prediction 413 437 - -
Stsc211760g00007 771 SUPERFAMILY FYVE/PHD zinc finger 304 372 IPR011011 -
Stsc211760g00007 771 Gene3D - 651 722 - -
Stsc211760g00007 771 MobiDBLite consensus disorder prediction 173 217 - -
Stsc211760g00007 771 MobiDBLite consensus disorder prediction 176 190 - -
Stsc211760g00007 771 ProSiteProfiles 'Homeobox' domain profile. 650 710 IPR001356 GO:0003677
Stsc211760g00007 771 MobiDBLite consensus disorder prediction 625 639 - -
Stsc211760g00007 771 SMART PHD_3 314 367 IPR001965 -
Stsc211760g00007 771 CDD PHD_PRHA_like 314 366 IPR045876 -
Stsc211760g00007 771 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 363 IPR013083 -
Stsc211760g00007 771 MobiDBLite consensus disorder prediction 580 594 - -
Stsc211760g00007 771 MobiDBLite consensus disorder prediction 405 540 - -
Stsc211760g00007 771 MobiDBLite consensus disorder prediction 487 501 - -
Stsc211760g00007 771 MobiDBLite consensus disorder prediction 46 77 - -
Stsc211760g00007 771 MobiDBLite consensus disorder prediction 114 158 - -
Stsc211760g00007 771 MobiDBLite consensus disorder prediction 641 656 - -
Stsc211760g00007 771 SMART HOX_1 648 714 IPR001356 GO:0003677
Stsc211760g00007 771 MobiDBLite consensus disorder prediction 580 659 - -
Stsc211760g00007 771 MobiDBLite consensus disorder prediction 735 771 - -
Stsc211760g00007 771 MobiDBLite consensus disorder prediction 114 156 - -
Stsc211760g00007 771 MobiDBLite consensus disorder prediction 717 732 - -
Stsc211760g00007 771 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 59 757 - -
Stsc211760g00007 771 FunFam Homeobox protein HAT3.1 652 721 - -
Stsc211760g00007 771 Pfam PHD-finger 314 369 IPR019787 -
Stsc211760g00007 771 SUPERFAMILY Homeodomain-like 647 714 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211760g00007 Stsc-Chr211760 48138 55383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211760g00007 171 707 Homeobox Transcription Factor Family AT3G19510 45.704 8.67e-132 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Stsc211760g00007 Homeodomain 3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211760g00007 - - aip:107617775 1043.11