Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211759g00003 ATGGCTTCTCCGGCAAACCCTCCAACTCAGAGCAGGGTATCCCCCGAAACCATTCAGAAAGCCATGGACGCACTCCTCAAATGGCGCAAATCCACCTCCTCCAACAAACCCCAAAAGCTCTTCGACAACGACGAGGAATTCATCTACCTCGTACTCACCCTCAAGAAGATACCCCAAAAGGATCACACTAACGTAACCCCGCACAAGATTCCCCTACCCTACACCCTCATCTCCCCTTCCTCTCAAACCTGCCTCATCGTCGACGACAGGCCCAAATCGGGCCTCACCAAGGCCCAAGCCCAATCCAAGATCCAGGCTGACAACGTCGCCGTTTCCAAGGTCCTCAAGCTCTCCAAGCTCGCCTCCGATTACAAGGCGTTTGAGGCGAAGCGGAAGCTCTGCGACTCATACGACTTGTTCTTCGCCGATCGGAGGGTGGTTCCTCTGCTTCCGAGGCTTTTGGGGAAGCAATTCTTCAAGAAGAAGAAGGTTCCGGTGCCCTTGGATTTGAAGAAGGGGAATTGGAAGGAGCAGGTGGATAGGGCGTATTCCTNNNNNNNNNNCGCGTTGCTCTCGATTGGGACCGGGACTTGTTGCGTTGTTAGGGTTGCTAAGGTGGCCATGGCGAGGGAGGAGGTTGTGGCGAATGTGGCCGCCGCAATCGAGGGGATTGTGGATGCTGTGCCGAGGAAGTGGAAGAATGTGAGGTCGTTTCATGTGAAACTGTTGGAGTCACTGGCCCTGCCGGTTTATCAGGCTGCGCCGGATGTGAAGTTGAGGATTGAGGGAAGAGACAGTGAAGGAGAGGTTATGGCGAAGAAGGAGGAGAAGGAGAAGGAGAAGAAGAAGAAGAAGAAGAAGGGGAGGATTCAGGAAGTTAGGTATATGGATAGTGAAGTTGGTGAGGATCATAGCAAAGATGAGTTAGTTAGTGATGATTTTGATGATGAGGATGGTGATAAGGGTAATGACTTGGTGAGTCTGAAGAGGAAGAAAGGAGATGAAGTGAAAACTGGAGCTTTGAGTGGGTTGAGTAATGTCAAACTAGAATCAAGAAAGACGACCATGAAGACGAAGAAACGATTGCTAGTTCGGCCGGGTGGAGCGGATATGGCAAAGAAAGTAAAGCATTAG 1134 0.5079 MASPANPPTQSRVSPETIQKAMDALLKWRKSTSSNKPQKLFDNDEEFIYLVLTLKKIPQKDHTNVTPHKIPLPYTLISPSSQTCLIVDDRPKSGLTKAQAQSKIQADNVAVSKVLKLSKLASDYKAFEAKRKLCDSYDLFFADRRVVPLLPRLLGKQFFKKKKVPVPLDLKKGNWKEQVDRAYSXXXXALLSIGTGTCCVVRVAKVAMAREEVVANVAAAIEGIVDAVPRKWKNVRSFHVKLLESLALPVYQAAPDVKLRIEGRDSEGEVMAKKEEKEKEKKKKKKKGRIQEVRYMDSEVGEDHSKDELVSDDFDDEDGDKGNDLVSLKRKKGDEVKTGALSGLSNVKLESRKTTMKTKKRLLVRPGGADMAKKVKH 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211759g00003 377 SUPERFAMILY Ribosomal protein L1 12 251 IPR023674 -
Stsc211759g00003 377 CDD Ribosomal_L1 18 250 IPR028364 -
Stsc211759g00003 377 Gene3D - 192 247 - -
Stsc211759g00003 377 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 20 244 - -
Stsc211759g00003 377 Gene3D - 93 185 IPR016095 -
Stsc211759g00003 377 MobiDBLite consensus disorder prediction 351 377 - -
Stsc211759g00003 377 MobiDBLite consensus disorder prediction 273 332 - -
Stsc211759g00003 377 FunFam Ribosomal protein L1p/L10e family 93 184 - -
Stsc211759g00003 377 MobiDBLite consensus disorder prediction 352 377 - -
Stsc211759g00003 377 Pfam Ribosomal protein L1p/L10e family 36 245 IPR028364 -
Stsc211759g00003 377 MobiDBLite consensus disorder prediction 290 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211759g00003 Stsc-Chr211759 37457 38893 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211759g00003 136 241 Cytoplasmic Ribosomal Protein Gene Family AT2G27530 25.472 5.71e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211759g00003 K14775 - ahf:112697689 359.762