Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211755g00007 ATGGCCTCCCTCTCACTCATTTCCCTTTTCTCCCTCTCCCTCCTACTCTTCCTTACCCTCTCCTCCGCCACGCGTCACCACCACAGCAACCACAACCAACACTCCTCCGCACCCTCCGCTTCCACTCCCACCCCCACCCCCACGGCCGACGCCTCACCGGCGATCCAACAAGCCTGCAAGGGCACACGATTCCCCCAGCAATGCCAGTCCACTCTTTCCCAATCCACCACTCTCCCGCCCAACCCAACCTCCCTCCAGCTCCTCCAAGCCGCCATCTCCGCCTCCTCCCAAAATCTTAAAACCGCCCAGTCCATGGTCAATTCCATCCTCGACACCTCTTCCGATAGCCGCAACCGCACCGTCGCAGCCACAACCTGCCTCGAGGAACTCGCCAACTCCGACCACCGCCTATCCCAAGCCACCGACGCCCTCACACATGACAAGACCAAGGACGCCCGCGCCTGGCTCACCGCCGCCCTCGTCTACCAGTACGACTGCTGGAATGGCCTCAAGTACGCCAACGACACATCCAAGGTCGGCCAAACCATGTCGTTTATCGACAACCTCACCCAACTCTCAAGCAACGCGCTCTCCATGGCCTTCTCCTACGATGCATTCGGGAAAGACACGGCCACGTGGAAGCCGCCGGCCACTGAGCGCGACGGATTCTGGGAGGCGACAGGATCGTCCGGAGGAAGTTCCGTACCGGTGTTTCCGACGAACCTGAAGGCGGACGCTACGGTGTGCAAGGATGGTAGTAATGGGTGTTACAAGACGGTGCAGGAAGCGGTTAACGCGGCGCCGAGTAACATTAACGGCGGAAGGAGGTTCGTGATATACATTAAAGAAGGGATATATGAAGAGACCGTTAGAGTTCCGTTAGAAAAGACGAATTTAGTGTTCTTGGGCGACGGCATGGGCAAAACCGTCATTACAGGCTCTGCTAACGCCGGCCAGCCCGGCATGACCACTTACAACTCTGCCACAGTCGCGGTTCTTGGGGATGGGTTCTTGGCAAAGGATCTCACAATACAGAACACTGCTGGCCCTGATGCTCACCAAGCAGTGGCCTTGAGACTTGACAGCGATCTCTCAATCATTGAGAGTTGTGAATTCATAGGCAACCAAGACACACTCTATGCTCATTCCCTCCGCCAGTTCTACAAATCATGCCGGATCATTGGCAACGTAGATTTCATCTTCGGAAACTCCGCCGCCATCTTCCAAGACAGCCAAGTCTTGGTGGCTCCAAGGCAAGTGAAGCCGGAGAAGGGGGAGAACAACGCTGTCACGGCCCACGGCAGGACAGATCCCGCGGAATCGACCGGGTTTGTGTTCCAGAACTGCCTGATCAATGGGACGGAGGAATACATGAAGTTGTATAATAGCAATCCGAAAGTGCACAAGAACTACTTGGGCAGGCCTTGGAAAGAGTACTCTAGAACAGTTTACATGAATTGCTTCTTGGAAGCACTGATCACACCCCAGGGTTGGATGCCATGGAGTGGTGACTTTGCTCTCAAGACACTCTACTATGGAGAATTTGAGAACAAGGGACCTGGTTCTGATCTGTCTCAGAGGGTATCATGGAGTAGTAAGGTCCCTTCGGACCATGTTTTTGCCTATTCAGTGCAGAATTTCATCCAAGGAGATGAGTATATTCAATTCTCAAGGAGCCAACACTCCTAA 1689 0.5465 MASLSLISLFSLSLLLFLTLSSATRHHHSNHNQHSSAPSASTPTPTPTADASPAIQQACKGTRFPQQCQSTLSQSTTLPPNPTSLQLLQAAISASSQNLKTAQSMVNSILDTSSDSRNRTVAATTCLEELANSDHRLSQATDALTHDKTKDARAWLTAALVYQYDCWNGLKYANDTSKVGQTMSFIDNLTQLSSNALSMAFSYDAFGKDTATWKPPATERDGFWEATGSSGGSSVPVFPTNLKADATVCKDGSNGCYKTVQEAVNAAPSNINGGRRFVIYIKEGIYEETVRVPLEKTNLVFLGDGMGKTVITGSANAGQPGMTTYNSATVAVLGDGFLAKDLTIQNTAGPDAHQAVALRLDSDLSIIESCEFIGNQDTLYAHSLRQFYKSCRIIGNVDFIFGNSAAIFQDSQVLVAPRQVKPEKGENNAVTAHGRTDPAESTGFVFQNCLINGTEEYMKLYNSNPKVHKNYLGRPWKEYSRTVYMNCFLEALITPQGWMPWSGDFALKTLYYGEFENKGPGSDLSQRVSWSSKVPSDHVFAYSVQNFIQGDEYIQFSRSQHS 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211755g00007 562 MobiDBLite consensus disorder prediction 33 52 - -
Stsc211755g00007 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 199 IPR035513 -
Stsc211755g00007 562 MobiDBLite consensus disorder prediction 27 52 - -
Stsc211755g00007 562 SUPERFAMILY Pectin lyase-like 242 557 IPR011050 -
Stsc211755g00007 562 Pfam Plant invertase/pectin methylesterase inhibitor 54 199 IPR006501 GO:0004857
Stsc211755g00007 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 202 IPR035513 -
Stsc211755g00007 562 NCBIfam pectinesterase inhibitor domain 36 198 IPR006501 GO:0004857
Stsc211755g00007 562 SMART PMEI_2 50 199 IPR006501 GO:0004857
Stsc211755g00007 562 Pfam Pectinesterase 245 551 IPR000070 GO:0030599|GO:0042545
Stsc211755g00007 562 PANTHER PECTINESTERASE 19 552 - -
Stsc211755g00007 562 Gene3D - 242 561 IPR012334 -
Stsc211755g00007 562 FunFam Probable pectinesterase/pectinesterase inhibitor 51 53 202 - -
Stsc211755g00007 562 CDD PMEI-like_3 58 199 - -
Stsc211755g00007 562 FunFam Pectinesterase 239 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211755g00007 Stsc-Chr211755 33032 35642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211755g00007 47 557 Carbohydrate Esterase AT5G09760 66.667 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211755g00007 - - mtr:11442613 817.379