LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211755g00005	ATGAGTGCAACTGGCAGAAAGCACCCTTCAAGGAGGGATTTAAGAGATGATCCCGAATTTGCAAGAAGTAGTCGGAGTAGGAGCCCTGCCTGCGATTTCAGGTGGGATTCAGAAGTTGGCGACAGGAAAAGAATGAGGCCTGGAGGATCAACACGACCATGTAGAGATTTTGCTGTTGGAAACTGCAGAAGAGGCAGCCATTGCCATTTCTTTCATGATGATAATCAAAACTATGACGATGGCTGGGAAAATAGAAGCAGACAAGACAGGGCACTCAGATATTCTGCACCATGTGATGGTGGGGACTATTCTCTTAGAAGTGGAAGATCTAATGATGCTTGTATTCATTTTGCAAAAGGATGGTGTAGAATGGGAGCATCATGCAAGTATATACACCACGACAATTCTGATGGGTTTCGTGAAATTTCCATGGCAGAATCAACTAGAGAAAGGGAAATTGATAGGAGGCACATGGAGAGTTCTTATGAGCGGGATGATGCTCATGGTCCAAATCACACTGGTGATATTCCTTGCAAATTTTTTGCTTTTGGAAATTGTCGGAATGGTAAACATTGCAGGTTTTCTCATGATAGTCAAGCATTTCAGAGCCCTGAAAGAAGTTTAAGGGATGATAGGATGAGCTATTATGTTCGAGATGAGGCATTGGATATACAAAAATTTAATGATTCAAGTAGTCCGCATAGAAGGCTAAGGGATGACAGGTGGCGTTTCAAAACCAACATGGCTGATGTAGATGAAGCTTGGGATGGTCCAGAAAAGAATGACTTAGGTGCTGTCTTTGATACAGAAAATCCGGTTGAGGATAACACCAACAGAATTTCGAGTGCCCCAGAGCCTAGTTTCACTGGTTGGCCAATGAATGATGGGTTGGACCGTAGTTTAGATAAGGGCAGAGTGAATGCTCAATCGGCGTTTTCAAGTGCAAAGAACGAAACCAACGATTGGGAGACACAAAATGCTGGAGACAACATGGGTAGTTCTCAGTCAATAAATACAGTGATCTGGCCGGGGGATGAAAAAATGTCTCCTGATTGGAAGTATGGTGTGGGATCTTCCTGCAAGACGGAAGAGAAGCATGGGCAGAATAAACAAGAAGTTGCTCCAGGACAAAGGTTTAATCAGAATGCTCTGAATTTAAATGCTTCGAGTGGTCAAGTTGTTGGACAAAGTCAAGTGGCAGTTTCTTTTGCTGCTCCAAGAGTGGGAATTGTAGAAGGTATGCAGAACCAGGAAATCAATATTGAGAAAAAGTGCACTGTTGAGCCAAACGTCATGGAGGCGATCCTATCACAAATCAGTTCAAGAGATCCTTCATCTCAGAACATGGTTAGCAAAGAACAGCTTGCTCAAATAACCAGCATCTCAGCCTCTCTGGCTCATATCATTGGTTCGGCTAAGCAGCTTCCACAACTCAATGCTACTTCAAATTCTCATGATGCAAGGGAGACTCCTTTACTGGGAAAAACTGAAGGGTCTAATAATAAGCCAGTTTTTACATTCAACAAGTCGGATCCTGTGGTTGGATCCCAGAAGCAGTATGATCCAATTTTTGACAGTATTGAAACAAAGGATGCTCATGCAAGTTGCACCGCACCATACTTTTCCCCAATTATAAAAATTATAAACAAAGCGGAAGAAATTCCAGCACTGTCATCTAAGTCGACAAGACAAAATCTTGATTATTCTAGTAAAACTGCCTTTCCAGAAGGACCACTTGTTAAGTGTGACCACTCTATTCAGTTGCAGCAGCAAGGTGAAAATATTGAAATTAATAAGGAGAAAGATGTAGTGATAGCTGAGGAAAAGCAAAGTTTGCAATGTGCTAATGAAATCACAAAAGAGAATATTCCTATGGAAAACATGGATCAAAATGGTGAAACTGATGAGGCCAAGAAAACAAAGGATGTTAAAGGGGTTCGTGCATTTAAATATTCATTGGTGGAGTTTGTCAAGGAGCTTCTAAAACCAACATGGAAAGAGGGTCAAATCACCAAAGAAGATTATAAATCAATTGTGAAGAAAGTTGCTGATAAGGTAGTCGGCACGGTGCAGCGGGCACATATTCCTCAAACGCAGGAGAAAATTGACCACTACCTATCATTGTCAAAACCAAAGCTTAACAAACTTCTTCAGGCATACGTAGAAAAGGCTCAGAAGGAATAA	2184	0.4162	MSATGRKHPSRRDLRDDPEFARSSRSRSPACDFRWDSEVGDRKRMRPGGSTRPCRDFAVGNCRRGSHCHFFHDDNQNYDDGWENRSRQDRALRYSAPCDGGDYSLRSGRSNDACIHFAKGWCRMGASCKYIHHDNSDGFREISMAESTREREIDRRHMESSYERDDAHGPNHTGDIPCKFFAFGNCRNGKHCRFSHDSQAFQSPERSLRDDRMSYYVRDEALDIQKFNDSSSPHRRLRDDRWRFKTNMADVDEAWDGPEKNDLGAVFDTENPVEDNTNRISSAPEPSFTGWPMNDGLDRSLDKGRVNAQSAFSSAKNETNDWETQNAGDNMGSSQSINTVIWPGDEKMSPDWKYGVGSSCKTEEKHGQNKQEVAPGQRFNQNALNLNASSGQVVGQSQVAVSFAAPRVGIVEGMQNQEINIEKKCTVEPNVMEAILSQISSRDPSSQNMVSKEQLAQITSISASLAHIIGSAKQLPQLNATSNSHDARETPLLGKTEGSNNKPVFTFNKSDPVVGSQKQYDPIFDSIETKDAHASCTAPYFSPIIKIINKAEEIPALSSKSTRQNLDYSSKTAFPEGPLVKCDHSIQLQQQGENIEINKEKDVVIAEEKQSLQCANEITKENIPMENMDQNGETDEAKKTKDVKGVRAFKYSLVEFVKELLKPTWKEGQITKEDYKSIVKKVADKVVGTVQRAHIPQTQEKIDHYLSLSKPKLNKLLQAYVEKAQKE	727

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211755g00005	727	Gene3D	-	167	235	-	-
	Stsc211755g00005	727	Pfam	CCCH-type zinc finger	177	197	IPR041367	-
	Stsc211755g00005	727	MobiDBLite	consensus disorder prediction	271	288	-	-
	Stsc211755g00005	727	PANTHER	PROTEIN FRIGIDA-ESSENTIAL 1	13	725	-	-
	Stsc211755g00005	727	Pfam	RNA-binding, Nab2-type zinc finger	53	72	-	-
	Stsc211755g00005	727	Pfam	RNA-binding, Nab2-type zinc finger	113	132	-	-
	Stsc211755g00005	727	ProSiteProfiles	Zinc finger C3H1-type profile.	48	75	IPR000571	GO:0046872
	Stsc211755g00005	727	ProSiteProfiles	Zinc finger C3H1-type profile.	173	199	IPR000571	GO:0046872
	Stsc211755g00005	727	MobiDBLite	consensus disorder prediction	482	510	-	-
	Stsc211755g00005	727	MobiDBLite	consensus disorder prediction	253	292	-	-
	Stsc211755g00005	727	SUPERFAMILY	CCCH zinc finger	175	197	IPR036855	GO:0046872
	Stsc211755g00005	727	MobiDBLite	consensus disorder prediction	1	33	-	-
	Stsc211755g00005	727	Gene3D	-	46	146	-	-
	Stsc211755g00005	727	ProSiteProfiles	Zinc finger C3H1-type profile.	108	135	IPR000571	GO:0046872
	Stsc211755g00005	727	SMART	c3hfinal6	109	134	IPR000571	GO:0046872
	Stsc211755g00005	727	SMART	c3hfinal6	50	74	IPR000571	GO:0046872
	Stsc211755g00005	727	SMART	c3hfinal6	172	198	IPR000571	GO:0046872
	Stsc211755g00005	727	MobiDBLite	consensus disorder prediction	311	335	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211755g00005	Stsc-Chr211755	24033	29574	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Stsc211755g00005		zf-CCCH_4	4.4e-06	CL0537

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211755g00005	-		K22909	gmx:100783856	742.651