Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211755g00004 ATGGATACAACAAACCTGCAGAATGGTAGTAATAGTAGCAGTCCCTTCATCACAAGCACTACTACTTCTTCTACTTGTTGGACACAACCTCATCATAATAATGATCACATAATTCACCAAATCCCTAACATCTTGGCTTCTCCAGGGATTTTCCCAAACTACCACCACCTTCTTCAAATGCATCATCATCCTCCTCCCTCAACTGCACTACCCTCCACTTCTTCTTCTTCATCATCAGGCTTCCTCGGCGACATACTTGGAGTAGTGCGCATAGAACAAGATCATGATCATGAAGACCAAGAGCCAGAAGAGGAGCTTGGAGCCATGAAGGAGATGATGTACAAGATCGCAGCTATGCAGCCCGTGGACATCGACCCCGCCACCATCCGGAAGCCAAAGAGGAGAAACGTTCGCATCAGCGACGACCCTCAGAGCGTGGCGGCTCGCCACCGCAGGGAGAGGATCAGCGAGAAGATCCGGATCCTCCAGAGGCTTGTTCCCGGTGGAACAAAGATGGACACTGCTTCCATGCTTGATGAAGCAATTCGCTATGTTAAGTTCTTGAAGAGACAAATTAGGTTGCTTCAATCCACTCCTCAACCGCCACAATCCAATTATATTATTAACACTAACACCGCCTTCTCTTTAGGCCCTCCTCCTACTTCTGATTGGCCTTTTGCACCCACCCCCTCTCTCCCAGCCGCCGCCTCCTCCTCCCTCTTGAATGTTCCGGCCGCCATCACCACACTTGGATTCAATGCCGGAGATCCTGATGCCCCCCTCTAA 786 0.5 MDTTNLQNGSNSSSPFITSTTTSSTCWTQPHHNNDHIIHQIPNILASPGIFPNYHHLLQMHHHPPPSTALPSTSSSSSSGFLGDILGVVRIEQDHDHEDQEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTPQPPQSNYIINTNTAFSLGPPPTSDWPFAPTPSLPAAASSSLLNVPAAITTLGFNAGDPDAPL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211755g00004 261 FunFam BHLH transcription factor 142 205 - -
Stsc211755g00004 261 CDD bHLH_AtIND_like 140 197 - -
Stsc211755g00004 261 Pfam Helix-loop-helix DNA-binding domain 149 188 IPR011598 GO:0046983
Stsc211755g00004 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 201 IPR036638 GO:0046983
Stsc211755g00004 261 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 10 233 IPR045843 GO:0003700|GO:0006355
Stsc211755g00004 261 MobiDBLite consensus disorder prediction 1 27 - -
Stsc211755g00004 261 SMART finulus 145 194 IPR011598 GO:0046983
Stsc211755g00004 261 MobiDBLite consensus disorder prediction 57 79 - -
Stsc211755g00004 261 Gene3D - 142 206 IPR036638 GO:0046983
Stsc211755g00004 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211755g00004 Stsc-Chr211755 14011 14796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211755g00004 106 203 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 89.216 2.06e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc211755g00004 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211755g00004 - - adu:107480233 295.819