Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211754g00007 ATGGATATAAAGGCTGCAAGAAGAACTGAACGTTTTGGTGCGAGAGCGACTACATGTGTCTACTGGCAAGCTGGGAAATGCAACAGAAATCCATGCAATTTTTTGCACAGAGAAACACCACTGCCACCAACTACTGGATATTGTAATGCCAATACTGATTCTCATAAGTGCACAAAGAAGCCTCATTCCTCTTCTGCTAATAATAAGTCTGCCCCTAAGTATATCTTAAAGAATGTATTGATAAGAAAGATCGGAGGAGGTAACCTTGTTAGAGATCATCAGAAACCAACTCAAAGTATTTGTAGATACTGGGTGAATGGCAATTGTGTACGTGGTGAGAAGTGTCGCAAATTGCATTCATGGTTTTATGGTAATGGCTTTTCAACATTAGCAAAGCTTCAAGAGCACAAGAAGGTTATCACTGGGATTGCACTTCCAGCTGGATCAGATAAACTATATTCTGGAAGCACTGATGGGACAATCCGGACATGGGACTGTCATACTGGACAATGTGTCAATGTGGTAAATCTTGGGGCAGAGGTTATTTCTATGATCAGCGAGGGTCCATGGATTTTCATTGGTCTGAGGAATGCTGTCAAAGCTTGGAATGTTCAGGCTGCACTAGAGTTTACTTTATATGGACCGATGGGGCGAGTCCTTGCCATGGTTGTTGGCGGTGAAACCCTTTTTGCCGGGGATGAGGATGGAGTAATTTCTGCATGGAGAGGCAGTTCTGAATCTATGCTATACTCAGGGTCCATGGACCACAGTATTAAGGTTTGGGACATGAATACATTACAGTGTAAAATGACCCTTAGCGGACATGCTGACACAGTAACATCCCTTATTTGTTGGGACTCTTATCTGTTATCAAGTTCGACTGACTGCACAGTCAAGGTCTGGGTTGCCACTGAAGAGGGACCTTTGAAAGTGACATACACACACAGAGAGGAGAATGGTGTTCGTGCACTTTGCGGGATGACTGACGCAGATGCTAAGCCAATATTGTTTTGCTCATGTCTTGACAATTCGGTTCGCCTTTATGAATTGCCATCATTTTCAGAGAGGGGTCGGTTATTTGCAAGACTAGAAGTGCGATCACTTGAGATAGGTCCTGGTGGACTCTTCTTTACTGGAGATGGAACTGGTTTGGTGACGGTGTGGAAATGGTTGGAAGAGCCCAAGGTGGCATCATTCTCTTGA 1203 0.4389 MDIKAARRTERFGARATTCVYWQAGKCNRNPCNFLHRETPLPPTTGYCNANTDSHKCTKKPHSSSANNKSAPKYILKNVLIRKIGGGNLVRDHQKPTQSICRYWVNGNCVRGEKCRKLHSWFYGNGFSTLAKLQEHKKVITGIALPAGSDKLYSGSTDGTIRTWDCHTGQCVNVVNLGAEVISMISEGPWIFIGLRNAVKAWNVQAALEFTLYGPMGRVLAMVVGGETLFAGDEDGVISAWRGSSESMLYSGSMDHSIKVWDMNTLQCKMTLSGHADTVTSLICWDSYLLSSSTDCTVKVWVATEEGPLKVTYTHREENGVRALCGMTDADAKPILFCSCLDNSVRLYELPSFSERGRLFARLEVRSLEIGPGGLFFTGDGTGLVTVWKWLEEPKVASFS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211754g00007 400 ProSiteProfiles Zinc finger C3H1-type profile. 13 39 IPR000571 GO:0046872
Stsc211754g00007 400 Gene3D - 120 245 IPR015943 GO:0005515
Stsc211754g00007 400 SUPERFAMILY WD40 repeat-like 103 390 IPR036322 GO:0005515
Stsc211754g00007 400 PANTHER - 30 397 IPR044715 -
Stsc211754g00007 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 271 IPR001680 GO:0005515
Stsc211754g00007 400 Gene3D - 14 119 - -
Stsc211754g00007 400 PRINTS G protein beta WD-40 repeat signature 152 166 IPR020472 -
Stsc211754g00007 400 PRINTS G protein beta WD-40 repeat signature 249 263 IPR020472 -
Stsc211754g00007 400 PRINTS G protein beta WD-40 repeat signature 289 303 IPR020472 -
Stsc211754g00007 400 SMART WD40_4 352 389 IPR001680 GO:0005515
Stsc211754g00007 400 SMART WD40_4 265 302 IPR001680 GO:0005515
Stsc211754g00007 400 SMART WD40_4 126 165 IPR001680 GO:0005515
Stsc211754g00007 400 SMART WD40_4 205 262 IPR001680 GO:0005515
Stsc211754g00007 400 SMART WD40_4 308 349 IPR001680 GO:0005515
Stsc211754g00007 400 ProSiteProfiles Zinc finger C3H1-type profile. 95 122 IPR000571 GO:0046872
Stsc211754g00007 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 301 IPR001680 GO:0005515
Stsc211754g00007 400 SMART c3hfinal6 13 38 IPR000571 GO:0046872
Stsc211754g00007 400 SMART c3hfinal6 95 121 IPR000571 GO:0046872
Stsc211754g00007 400 Pfam WD domain, G-beta repeat 267 301 IPR001680 GO:0005515
Stsc211754g00007 400 Pfam WD domain, G-beta repeat 129 165 IPR001680 GO:0005515
Stsc211754g00007 400 Pfam WD domain, G-beta repeat 247 262 IPR001680 GO:0005515
Stsc211754g00007 400 Gene3D - 246 399 IPR015943 GO:0005515
Stsc211754g00007 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 174 IPR001680 GO:0005515
Stsc211754g00007 400 ProSitePatterns Trp-Asp (WD) repeats signature. 249 263 IPR019775 -
Stsc211754g00007 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 165 - -
Stsc211754g00007 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211754g00007 Stsc-Chr211754 40076 42329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211754g00007 89 301 Eukaryotic Initiation Factors Gene Family AT2G46290 26.724 1.59e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc211754g00007 WD40 0.00024 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211754g00007 - - gmx:100787799 535.028