Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211751g00003 ATGCTGATTCTTGAAAACATGGATCATGGAGAACTCTCACATGGTTTCCCTCATCAGAATAATCCAACCACTATTACTACTCCTCCTCCTCCTCCTTCATCTAATAACCCTTCTTCCTCTTCTTCTTTCAAGAGGAAGAGAAACCTCCCAGGAAACCCAGATCCCGAAGCGGAAGTAATAGCGTTATCACCAAAGACGCTAATGGCAACAAACCGGTTCTTGTGTGAAACGTGCGGGAAGGGTTTCCAAAGGGATCAAAACCTGCAACTCCATAGAAGAGGACACAACCTGCCATGGAAGCTGAAACAAAGAACGAACAAAGAACCAAAGAAACGCGTGTACGTGTGCCCTGAGAAAACGTGTGTCCACAACCACCCTTCAAGAGCTCTGGGAGACTTGACTGGGATCAAGAAGCACTTTTGCAGGAAGCACGGCGAGAAGAAGTGGAAGTGCGAGAAATGCTCAAAGCGATATGCAGTTCAGTCTGATTGGAAAGCACACTCCAAAACCTGCGGTACAAGAGAATACAAGTGTGATTGTGGTACCATCTTTTCACGGAGGGATAGCTTCATAACACACAGGGCATTTTGTGATGCATTGGCAGAAGAAACAGCTAGGGTAAATGCAGCATCAACCATAAACAACAACAACAATAATAATAATAATAACATTATTAGTTACAATAACATGATGATAGGAACCTCCATGGCCCCTCATAATCATAGTAGCATGGCAACCCATTTTGCTTCAATTTGCAATAAGCCACCAATTCCATTCACTCATCAAGAATCTCAACATAACCAAACAACAACAACAACAACAACAAGAGGACTCTCCCTTTGGATGGGACACCATCAAGAACCAACAATGGCTGCTAATAATCATCCCAATAACAATAACTACCATCTGAATTGGGTATTTGGTTCCAAAATTTCAACCAATCCAACCCAAGATCTAAGTAGCAATACTTCTGCTTCTGCTTCTGCATCGCTTCCAATACTAGGAAGCATTGTTAGTGTTCCTTCATTGTATAGCACACAACACCAATCCAATCATCAAACATGTGTTTCTTCGTCGTCGGCCAACATGTCGGCGACGGCGTTGTTGCAGAAGGCCGCTCAAGTTGGTTCAACCTCAACAGACCCGTCATCATTATTCTTGGGGGCATTAGGGTTGAAATGCAGCAATAATAATAGCGCTCAAGGGCAAGATGGGAATAACAATAAGTTTTCTGGGGTGTATGGTTCAAGTTTGGTACTAACAAATAATATTACTACAGAGCAAGAGAACAACCCTGCTTGTGAATTGTCACAATTGCCCCCAGCAAAGAGGAGGCATGTAATGCTGAATGAGGAGAGTGGAGGAGGGCAAACTAGGGATTTCCTTGGTGTTGGGGTTGCAAACCACCATTTGCCACCCTTCATCAACCAAAGGTTGGATTTGATTTGA 1449 0.4341 MLILENMDHGELSHGFPHQNNPTTITTPPPPPSSNNPSSSSSFKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEPKKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASTINNNNNNNNNNIISYNNMMIGTSMAPHNHSSMATHFASICNKPPIPFTHQESQHNQTTTTTTTRGLSLWMGHHQEPTMAANNHPNNNNYHLNWVFGSKISTNPTQDLSSNTSASASASLPILGSIVSVPSLYSTQHQSNHQTCVSSSSANMSATALLQKAAQVGSTSTDPSSLFLGALGLKCSNNNSAQGQDGNNNKFSGVYGSSLVLTNNITTEQENNPACELSQLPPAKRRHVMLNEESGGGQTRDFLGVGVANHHLPPFINQRLDLI 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211751g00003 482 FunFam protein indeterminate-domain 12-like 52 120 - -
Stsc211751g00003 482 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Stsc211751g00003 482 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Stsc211751g00003 482 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Stsc211751g00003 482 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Stsc211751g00003 482 Gene3D Classic Zinc Finger 142 209 - -
Stsc211751g00003 482 Gene3D Classic Zinc Finger 51 126 - -
Stsc211751g00003 482 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 469 IPR031140 -
Stsc211751g00003 482 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211751g00003 Stsc-Chr211751 27687 31284 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211751g00003 44 466 IDZ Gene Family AT1G03840 52.665 2.02e-137 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc211751g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211751g00003 K25870 - gmx:100790620 558.91