Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211748g00006 ATGAGCGAGTCCAACCATAATACTACTGAAGCAAATACTACAAGCTGTGACCAATTTGTCAAAGAGATGAGACAGCAGGAGGAGCCTACTATCTTACAATTTTCAGAAGATGAGGAAGATCTCGTTGCTAGGATGTTTAGATTGGTTGGGAAGAGGTGGTCTCTTATTGCTGGGAGAATCCCAGGAAGAACAGCACAAGAGATTGAGAAGTATTGGACTTCAAAGTGCGCATTTCCCAGTGACCAATGCTCTTCCTCTGCATAA 264 0.4318 MSESNHNTTEANTTSCDQFVKEMRQQEEPTILQFSEDEEDLVARMFRLVGKRWSLIAGRIPGRTAQEIEKYWTSKCAFPSDQCSSSA 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211748g00006 87 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 80 IPR017930 -
Stsc211748g00006 87 FunFam MYB-like transcription factor 33 75 - -
Stsc211748g00006 87 SMART sant 30 78 IPR001005 -
Stsc211748g00006 87 ProSiteProfiles Myb-like domain profile. 34 76 IPR001005 -
Stsc211748g00006 87 Gene3D - 33 76 - -
Stsc211748g00006 87 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 33 75 - -
Stsc211748g00006 87 Pfam Myb-like DNA-binding domain 33 72 IPR001005 -
Stsc211748g00006 87 CDD SANT 34 72 IPR001005 -
Stsc211748g00006 87 SUPERFAMILY Homeodomain-like 34 74 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211748g00006 Stsc-Chr211748 43331 44162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211748g00006 34 74 MYB Transcription Factor Family AT3G13540 63.415 1.10e-14 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc211748g00006 Myb_DNA-binding 9.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211748g00006 - - adu:107482590 162.155