Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211747g00005 ATGAGCAAAGTTAGGGTTCTTATTGTCCTTGTGATACTTATTTCAAGTGGTGGAATATTATTGAGCAATGTTTGTGCAAAATCCCCACCTGATCATGTTAACATAGGAGCAATTTTAGCTTTCAACTCAACCATTGGAAAGGTGGCAAAAAATGCTATAGAAGCAGCAGTGGATGATGTAAATTCAGATCCAACAATTCTCAGTGGAACCAACCTTAATATCTCAATGCAAGACACTAAACTCTCAATTGGATTTCTAGGAATCATTGACTCATTGCTATTGATGGAGAAAGACACTGCAGCCATAATTGGTCCACAATACTCAGTAATGGCTCATGTGATTTCACACATTGCAAATGAAATGCAAGTTCCTCTCTTATCATTTGCAGCATCAGACCCTACTCTCACTTCACTCCAATTCCCATATTTTGTTAGAACAACACAGAGTGATCTTTATCAAATGTCTGCAGTGGCAGACATTGTTGATCACTTCCAATGGAGAGATGTCATTGCAATCTTCATTGATGATGATCATGGAAGAAACGGGGTAGCTGCCTTAGGCGACAAGCTAGCCGAAAAGCGCGGTAAAATCTCATACAAAGCAGCCCTTAATCCTGATAATAATAACAATGTCATCAACAACAAGGAAGAAATCAATAGTGCATTAGTTAAAGTTGCTTTAATGGAGTCTAGGGTTATAGTTCTTCACATTTACCCTTCTTTTGGCCTTGAAGTTCTTCACATTGCACAAACCCTAGGCATGATGGGAAGTGGTTATGTTTGGATTGTCACTGATTGGCTCACAACTGCTCTTGATTCTGATCCATCATTGTTGGCTTCGAGCTCAATCATGAATGATATGCAGGGTGTTATCACCTTGAGAATGTTCACACCAGATTCAAGAATCAAGAGCAATTTTGAGTCTAGGTGGCCCAAATTAGCCCATCAAACTAGTAATAACAATGAAAAGGGTTCTTTAGGGTTGAACATCTTTGGTTTATATGCTTATGACACTGTTTGGACCCTAGCTTATGCACTTGATGAATTCTTTAGCAATGGTGGAACTTTGACATTTTCAAATGATTCAATTCTAAACACCTTAAGGGGTGATACCCTTCATCTTGATACCATGGGAGTGTTTCTCAATGGTAGCATGTTGCTTCAGAAGATTCTAGAAGTTAATCGAACCGGTTTAACCGGTCGGATGGTTTTTTCTCAAGATGGAAACCTAATGAACCCATCATATGAGATCATTAATGTGATTGGAAATGGGGTTAGGAGGATAGGGTTTTGGTCCAATTCTTTTGGCCTTCATAGTGGAGAACAAGTTCCAAATCATGAGAATTCAAGTGAAGGATTATATGGTGTGATTTGGCCTGGCCAAACAACACAAACACCAAGAGGTTGGGTTTTTGCTAGCAATGGAAGGCATTTGAGGATTGGGGTGCCACTTAGGGTTAGCTACCATGAATTTGTGTCAAGAATTGAAGGCAGTGACATGTTTGGTGGTTATTGCATTGATGTGTTCACAGCTGCATTGGATTTATTGCCTTATCCAGTCCCATATAAGTTTATTCCATTTGGTGATGGTAAAACCAATCCATTGAATTCAATGCTTCTTCAGAAGGTCACAACTGGTAACTTTGATGCTGTGGTGGGGGACATAACCATTACCACAAACAGAACTAAGATTGTGGATTTCACACAGCCATACATTGAATCTGGTTTAGTTGTTGTGGCACCTATAAGGAAGATGAAATCAAATGCTTGGGCCTTTCTAAGACCATTTACTCCAATGATGTGGCTTGTGACTGGAATGTTTTTCTTAGCTGTTGGAGCTGTTGTTTGGATTTTAGAACGTCGCTTGAATGATGATTTTAGAGGCACTCCTAGGAGACAATTCGTCACTATTATATGGTTTAGCTTCTCAACCTTATTTTTTGCACATAGAGAGAGAACTGTTAGCACTCTTGGTAGGTTAGTGCTAATCATATGGCTATTTGTGGTTCTAATATTGAATTCAAGCTACATTGCAAGCTTGACTTCAATCCTCACAGTTGAACAACTCTCTTCCCCAATTAAGGGAATTGAAAGCTTAGCAACAAGCAATGAACGAATTGGTTACTTGAGAGGCTCATTTGCTGAGAATTATCTAACAGATGAACTCAACATACATAGGTCAAGGCTTGTTCCTCTGAATGATCCATCAGAGTATGAGAAGGCATTGAAGGATGGAGCCGCTAATGGTGGTGTTGCTGCAATCATTGATGAACGTGCATACATGGAACTCTTCTTAGCAACTAGGTGTGAATTTGGGATTGTTGGTCAAGAGTTTACCAAAATGGGATGGGGTTTTGCCTTTCCAAGGGACTCACCCTTAGCAATAGACATGTCAACAGCAATTCTAAAGCTATCAGAGAATGGAGATCTTCAAAGAATTCATGACAAATGGCTAACAAGAAGTGCTTGTAGCTCTGAAGGTGCAAAGCAAGGCATTGATAGGCTTGAGACTAAGAGCTTTTGGGGCCTCTTCCTTCTAATTGGCATTGCATGCTTCATTGCTCTTCTTTGCCATCTTATTAGGATGGCTTACCGTTTTAAGAGGCATTATTCTTCAAACAACACCAATAGCAACCTTGAAGTTGAAGGCTCATCTTCATGTTTTTCTCGTATCAAATCTTTCTTTTTATTTGTCAATGAAAGAGAAGAGGATGACGAGAAGATAAAGAGAAGGCGCAAAGATAATAGAGTAGTCGCGCATGAAGTAGACGTGTCACCATTGCATAACTCAAATGTTAGCATCCATGTTGAAAATGGTGCCTAA 2823 0.3957 MSKVRVLIVLVILISSGGILLSNVCAKSPPDHVNIGAILAFNSTIGKVAKNAIEAAVDDVNSDPTILSGTNLNISMQDTKLSIGFLGIIDSLLLMEKDTAAIIGPQYSVMAHVISHIANEMQVPLLSFAASDPTLTSLQFPYFVRTTQSDLYQMSAVADIVDHFQWRDVIAIFIDDDHGRNGVAALGDKLAEKRGKISYKAALNPDNNNNVINNKEEINSALVKVALMESRVIVLHIYPSFGLEVLHIAQTLGMMGSGYVWIVTDWLTTALDSDPSLLASSSIMNDMQGVITLRMFTPDSRIKSNFESRWPKLAHQTSNNNEKGSLGLNIFGLYAYDTVWTLAYALDEFFSNGGTLTFSNDSILNTLRGDTLHLDTMGVFLNGSMLLQKILEVNRTGLTGRMVFSQDGNLMNPSYEIINVIGNGVRRIGFWSNSFGLHSGEQVPNHENSSEGLYGVIWPGQTTQTPRGWVFASNGRHLRIGVPLRVSYHEFVSRIEGSDMFGGYCIDVFTAALDLLPYPVPYKFIPFGDGKTNPLNSMLLQKVTTGNFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKMKSNAWAFLRPFTPMMWLVTGMFFLAVGAVVWILERRLNDDFRGTPRRQFVTIIWFSFSTLFFAHRERTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPIKGIESLATSNERIGYLRGSFAENYLTDELNIHRSRLVPLNDPSEYEKALKDGAANGGVAAIIDERAYMELFLATRCEFGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLETKSFWGLFLLIGIACFIALLCHLIRMAYRFKRHYSSNNTNSNLEVEGSSSCFSRIKSFFLFVNEREEDDEKIKRRRKDNRVVAHEVDVSPLHNSNVSIHVENGA 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211747g00005 940 Pfam Bacterial extracellular solute-binding proteins, family 3 537 819 IPR001638 -
Stsc211747g00005 940 Gene3D - 149 437 - -
Stsc211747g00005 940 SMART GluR_14 479 820 IPR001320 GO:0015276|GO:0016020
Stsc211747g00005 940 SUPERFAMILY Periplasmic binding protein-like I 28 469 IPR028082 -
Stsc211747g00005 940 FunFam Glutamate receptor 149 309 - -
Stsc211747g00005 940 FunFam Glutamate receptor 473 589 - -
Stsc211747g00005 940 Gene3D - 734 825 - -
Stsc211747g00005 940 FunFam Glutamate receptor 589 719 - -
Stsc211747g00005 940 Pfam Receptor family ligand binding region 50 422 IPR001828 -
Stsc211747g00005 940 Gene3D - 469 588 - -
Stsc211747g00005 940 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 879 IPR015683 -
Stsc211747g00005 940 FunFam Glutamate receptor 715 822 - -
Stsc211747g00005 940 SUPERFAMILY Periplasmic binding protein-like II 454 820 - -
Stsc211747g00005 940 Gene3D - 589 723 - -
Stsc211747g00005 940 Pfam Ligand-gated ion channel 820 851 IPR001320 GO:0015276|GO:0016020
Stsc211747g00005 940 PIRSF IGluLR_plant 2 936 IPR017103 -
Stsc211747g00005 940 Gene3D - 51 412 - -
Stsc211747g00005 940 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 335 347 - -
Stsc211747g00005 940 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 244 267 - -
Stsc211747g00005 940 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 46 62 - -
Stsc211747g00005 940 CDD PBP1_GABAb_receptor_plant 34 437 IPR044440 -
Stsc211747g00005 940 CDD GluR_Plant 478 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211747g00005 Stsc-Chr211747 42701 48008 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211747g00005 30 914 Ion Channels AT1G42540 58.036 0.0 1050
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211747g00005 K05387 - gmx:100790502 1432.16