Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211747g00004 ATGATTAGAATTTGGGGTGTTGTGGTGTTGATTGTTCTTCTCTCCAATGGCTTCTGTTCAAATGGTGTCGGCATGGATGATATTGATGACAAAAATAGTAATAATGCCACAATTCCTGATGTTGTAAATATTGGAGTTCTCTACTCTTTCAATACAAGTGTAGGCAAAATTGTGAAAATCGCCGTAGAAGCCGCGGTTAAAGATGTAAATTCTGATCCATCAATTCTTGGTAAAACTCATCTCCAGCTCTCACTTCAAGAAGATTCCAAGTATAGAGGGTTCTTGAGCATTGCTGAGGCCTTGCAGCTCATGGCAACTCACACTGTGGCCATAATTGGCCCTCAGACCTCCACAACAGCTCATGTCATATCTCACATTGCGAACGAGCTTCAAGTTCCTCTGCTGTCGTTTTCAGCCACTGACCCCACCCTTTCTTCACTTCAGTTCCCGTTCTTCATTCGGACATCTTTTAATGATATGTATCAGATGACTGCTATAGCAGATCTTGTTAACTACTATGGTTGGAGGGAGGTTATTGCAGTTTATGGTGATGATGATCACGGGAGGAATGGAATCGGTGCCTTAGGGGATAAGCTAGCCGAGAGGCGCTGCAAGATCTCGTTTAAAGCTCCTATGAGTCCTGAGGCAACCAGGGAAGAGATCACTGATGTGCTTGTTCAGGTAGCTCTAGCTGAATCGCGAGTTATAGTCCTTCACACAAGTACTACTTGGGGGCCGAAAGTGCTAAATGTGGCGAAATCTCTTGGAATGATGGAAAATGGTTATGTCTGGATAGCTACCACTTTTTTGTCTACGGGGATTGACATAAATTCTCCGCTCACTTCGAGTGTAATGGATGACATTCAAGGAGTTATTGCGCTACGAATGTATGTGCCGGATTCAAAGCTGAAGAGATCATTCATTTCTAGGTGGAAAAACTGGACTAATGGCTCCCTTGGACTGAGTACTTATGCTATCTTTGCATATGATACTGTCTATGTTCTTGCTCATGCGCTTGCTGCGTTTTTTAAACAAGGGAACCGAATTACCTTCTCGTCTGATTCAAAGACATCTCTAATACAAGGTGACAACATGCATCTTGATGCTGTCAAAATATTCAACGAAGGAAAGCTGCTCCGAAAAAGCATTTATGAGGTTAACATGACCGGTGTAACAGGTCACTTCAAGTATACATCTGATGGAAACCTTGCTAATCCGGCATATGAAATCATCAATGTGGTTGGAACAGGGACTAAGAGGATTGGTTATTGGTCTAATCATTCTGGACTATCGTCTGTTAAACCTGAAGAACTTTATTCAAAGCCGGTTAATCATTCGAGTTCAAGTCAAAAGCTACTATCTGTGATTTGGCCAGGGGACACAACACTGAAACCTCGAGGTTGGGTTTTTCCAAACAATGGAAGGATGTTAAAAATTGGAGTACCAAAAAGGGTCAGTTACCGAGAATTTGTCTCACAAGTAAAAGGCACTGATATGTTCAAGGGGTTCTGCATTGATGTCTTTCTTTCTGCAGTGAACTTGCTGCCTTATGCTGTCCCCTATAAGTTTATTTCGTACGGGGACGGTCACAGCAATCCTAGTAACACCGAACTTGTCCGTCTGATCACAGCCGGTGTGTTTGATGCTGCTGTAGGTGACATTACAATTACTACGGAAAGAACAAAGATGGTGGATTTTACACAGCCGTTCATTGAATCCGGCCTAGTGGTAGTAGCATCGGTGAAGAAGACGGACTCAAATGCTTGGGCATTCTTGATGCCATTTACACCAATGATGTGGATTGTCACAGCTATCTTCTTCCTAGTTGTTGGATTTGTTGTCTGGATTTTGGAGCATAGGCTCAATGATGATTTTAGGGGACCTCCCAAAAAACAAGTCGCCACGATTTTATGGTTCAGTTTTTCAACCATGTTTTTCGCTCATAGGGAAAACACGGTGAGCACGCTCGGTCGATTCGTGCTGCTCATATGGTTATTCGTTGTTCTCATAATCAACTCGAGTTATACAGCAAGCTTGACTTCAATCCTCACAGTGCAACAGCTTTCTTCACCTGTTAAGGGCATTGAAAGTTTGATAAACAACAATGAGCCTATTGGCTTCATGCAGGGTTCATTCACTCAAGATTATTTAGTAAACGAAATTGGCATCGATGCAACGAGGCTTGTACCTCTAACGACAACAGAAGAATCTGCCATTGCTCTGGAGAAAGGTCCCCATAAAGAGGGCGGCATTGCTGCATACGTCGATGAGCGTGCATACATGGAGCTGTTCCTTTCAAGCCGCTGCGATTTCAGCGTTGTTGGTCAAGAGTTCACCAGAAATGGTTGGGGATTTGCCTTTCCTCGAGACTCGCCATTAGCGGTTGACCTGTCAACAGCGATTTTGGAGTTGGCCGAGAACGGCGATCTCCAACGGATCCACGACAAATGGCTTTTGCGCAGCGCTTGCCTATCGCAAGGGGCGAAGCTCGAAGTGGACAGACTCAAGCTAAGGAGCTTCTGGGGTCTCTACCTACTCTGCGGCTTGGCGTGTTTGGTTGCTCTCTTTGTATATCTGATTCAAACCATGAAGCAATACAAGAAGCACTACACCGAGGAAGACAGATCGTCTTCCGGTCTAAAGTCTTCCGGCCTAAAGTCAAAGCCGTCGCGATTAAGGACTTTCCTTATATTTGCAGATGAAAAGGAAGAGATAGTTAAGAGCCGCTCCAAGCGAAGGAAAATGGAGATGGCATCATTCAAAAGCACAAGTGAGGTCGGATCATCCAATAATGGATATTGTCAATCACCTTCAGAGAAAATTGAGTGTACTAATAATGAGACATGA 2847 0.4387 MIRIWGVVVLIVLLSNGFCSNGVGMDDIDDKNSNNATIPDVVNIGVLYSFNTSVGKIVKIAVEAAVKDVNSDPSILGKTHLQLSLQEDSKYRGFLSIAEALQLMATHTVAIIGPQTSTTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTSFNDMYQMTAIADLVNYYGWREVIAVYGDDDHGRNGIGALGDKLAERRCKISFKAPMSPEATREEITDVLVQVALAESRVIVLHTSTTWGPKVLNVAKSLGMMENGYVWIATTFLSTGIDINSPLTSSVMDDIQGVIALRMYVPDSKLKRSFISRWKNWTNGSLGLSTYAIFAYDTVYVLAHALAAFFKQGNRITFSSDSKTSLIQGDNMHLDAVKIFNEGKLLRKSIYEVNMTGVTGHFKYTSDGNLANPAYEIINVVGTGTKRIGYWSNHSGLSSVKPEELYSKPVNHSSSSQKLLSVIWPGDTTLKPRGWVFPNNGRMLKIGVPKRVSYREFVSQVKGTDMFKGFCIDVFLSAVNLLPYAVPYKFISYGDGHSNPSNTELVRLITAGVFDAAVGDITITTERTKMVDFTQPFIESGLVVVASVKKTDSNAWAFLMPFTPMMWIVTAIFFLVVGFVVWILEHRLNDDFRGPPKKQVATILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIESLINNNEPIGFMQGSFTQDYLVNEIGIDATRLVPLTTTEESAIALEKGPHKEGGIAAYVDERAYMELFLSSRCDFSVVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLRSACLSQGAKLEVDRLKLRSFWGLYLLCGLACLVALFVYLIQTMKQYKKHYTEEDRSSSGLKSSGLKSKPSRLRTFLIFADEKEEIVKSRSKRRKMEMASFKSTSEVGSSNNGYCQSPSEKIECTNNET 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211747g00004 948 FunFam Glutamate receptor 588 718 - -
Stsc211747g00004 948 SUPERFAMILY Periplasmic binding protein-like I 37 468 IPR028082 -
Stsc211747g00004 948 SUPERFAMILY Periplasmic binding protein-like II 452 820 - -
Stsc211747g00004 948 Gene3D - 588 714 - -
Stsc211747g00004 948 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 42 885 IPR015683 -
Stsc211747g00004 948 FunFam Glutamate receptor 472 588 - -
Stsc211747g00004 948 Gene3D - 158 430 - -
Stsc211747g00004 948 Pfam Ligand-gated ion channel 819 851 IPR001320 GO:0015276|GO:0016020
Stsc211747g00004 948 CDD PBP1_GABAb_receptor_plant 43 433 IPR044440 -
Stsc211747g00004 948 FunFam Glutamate receptor 714 822 - -
Stsc211747g00004 948 Pfam Bacterial extracellular solute-binding proteins, family 3 534 818 IPR001638 -
Stsc211747g00004 948 Gene3D - 765 825 - -
Stsc211747g00004 948 FunFam Glutamate receptor 158 313 - -
Stsc211747g00004 948 PIRSF IGluLR_plant 4 947 IPR017103 -
Stsc211747g00004 948 MobiDBLite consensus disorder prediction 921 948 - -
Stsc211747g00004 948 SMART GluR_14 478 820 IPR001320 GO:0015276|GO:0016020
Stsc211747g00004 948 MobiDBLite consensus disorder prediction 909 948 - -
Stsc211747g00004 948 Pfam Receptor family ligand binding region 59 415 IPR001828 -
Stsc211747g00004 948 Gene3D - 475 587 - -
Stsc211747g00004 948 CDD GluR_Plant 475 818 - -
Stsc211747g00004 948 Gene3D - 60 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211747g00004 Stsc-Chr211747 23623 27500 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211747g00004 39 925 Ion Channels AT3G51480 59.910 0.0 1130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211747g00004 K05387 - gmx:100788917 1504.58