Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211747g00003 ATGAAACCTCTTTATCGTCACATTCTTCTCTTTCTCTCTATTCTATGCGCTGTCGTTTTGCAATTCTTCGTTACCCTCTTCAGCTTCAATGATGTTTCATCACACCCACTGCCACCACCGATCTCACAAACCCCTCTTCTCAAGCTCCATCATCATCTTCGTCTACCACAGCAGCAGCAACAACTCAAGGCTCTTCCTTCACCGTCTTCACGTTCCCTTCTCTCTCTTTCTCCCAAGCCAACTACAGCACTGGTTGCTGCTCTAGATGGCACTATGTATTTGGTGGACAAACAGGAGAATGGCCCCACAAGAGTGATATGGTCGTTCTCAACAGGATCCCCAATCTACCATTCATATCAAGCTCCTATTCACAAGGATAGCGGTAAAGAAAATGGGTCTGCAGCACGAATCAGCGGGTCTGTGGAATGCGGGGATGACTGGTCATTGTACATGCATGATAAACACTTTGGTAAAATGAAAATCTCAGAATCAATTGCAGAATATGTTGCTCGTACACCTACCTTTTCAGATGATGGAGCAGTTACACTTGGATCCAAGAGAAGCACTTTGTTTGAAGTTGATGTTAAAACCGGAAGGATCATTCAAACCCATACTATGTCTGATTCTGATAATTCTTCTACATCTTGGAGTGATGACGAGAAGAGTGATACAGATATCCTTAGAACAAAGAAAAAGGATCTTGCTAATCCTGCAGAGCTAAATTCGCCAGAGTTGCTACTCAAGATATTTAGGACAGATTATTCTCTTCGATCTGTTGGTCCTAGTTCAGGAGTAGTTTTGTGGACTATGACCGTATCTGAATTCGAGGCTGTATTATTATGCCAGCATACTTCATTTGATGCCGATGGTGAGTATGTTTCTGACAGTGGGTTCAGTTTTGCGATGCCATATCCATGTCAAGAGATCCAGCCAGTCTTTCGCTTGCGAAAGAATTTTATACTAGAACCCTCGATCACTGAAAGGTTGCCTGGTTCTGATCATGAAAACAATATGCCTTTGATGCCTGCGTCAGATTTGATGCTTCCTTCACAAGAGATTTTTGAAAAATTAAATGTTGATTATGGTAATACAATGCTTCCTGTGCCAATACCAAATTCTTTGCCTTCGCCGGAACCAAAAATTGTGTATCCAAGCCGAATGCATGAATGGTCAACACCGTTGCGTTTTATGATGCTAATGCTTCTGGGCTTTGTCCTCTATAATGTAGTTGTTAAAAGTAAAGATATGACAAAGGACCAAAACCAGTCTGAGTTGAAGATTTCACCTGCTAAGAAAAAGAAGCCACGTAAATCAGGAAAGAACAACGTAGCAGTTGACAAAAAGGAAAAGCGTCTGTCCTCCGAAGATGAGGATGTGCTGATGCGAAAGGATCTCGATGTAGAAGCGGGCACATGGATGCAATTTAACCAAGNNNNNNNNNNCGGACGCAGGGTTGGTAAACTGCTTGTGTCAAATAAAGAAATTGCTAAGGGAAGCAACGGTACCATCGTCTTTGAGGGAATATATGAAGGTCGGGCAGTTGCTGTCAAGCGTTTGGTCAAGACTCATCATGATGTAGCCTTCAAAGAAGTCCAAAATCTCATTGTATCTGATCATCACCCAAACATTGTTCGATGGCATGGGGTAGAATATGATCAAGATTTTGTTTACCTTGCTCTGGAAAGATGTACATGCAGCTTGGATGATTTAATTCAAATTTATTCGGATATATCAGATAACCCTCTGTTTTGGAAGAGCCAATCTTTCAAATCTTCTGTTAAGGCCCAAATTGATACAGGGAAGGATAATATGCATGGTCTGTGGAAAGCCAATGGCTATCCATCACCTCTATTACTGAAATTGATGAGGGATGTTGTTTCTGGGGTAGTTCATTTGCATGAACTAGGAATAATACATAGAGATTTGAAACCCCAAAATGTTTTGATAATCAAGGAAAGATCCTTGTGTGCAAAGCTTTCTGATATGGGCATCAGCAAACGTCTCCCTGAAGATATGTCTTCTTTGGGTCATAACGCTACTGGGGCTGGCAGCTCAGGTTGGCAAGCACCAGAACAACTTGGTCAAGGACGCCAAACACGGGCCATGGATTTATTTAGCTTAGGTTGTGTCCTCTTTTTCTGTATGACTGGGGGGAGACATCCGTTTGGAGAACGGCTAGAACGTGATGTTAATATTGTGAAAAATAGAAAGGATCTTTTCTTAGTGGAGTTCATTCCTGAAGCAGAAGACCTAGTTTCTAGTTTACTGAACCCTAACCCTGATACTAGGCCGAAGGCAATTGAAGTATTACACCATCCATTTTTTTGGAGTCCAGAAATGAGACTTTCATTTTTACGTGACACCAGTGATAGGGTGGAACTAGAAGATAGGGAGGCTAATTCTGTTCTTCTGAACGCATTAGAAAGCATTGGTACAGTTGCTTTAGGTGCAAAATGGGACGAAAAGTTGGAAATGGCTTTTCTTAATAACATTGGTCGATATCGACGGTACAAGTATGATAGTGTTCGAGACTTGTTGCGGGTCATGAGGAACAAACTAAATCATTATAGAGAGTTGCCTCAAGAAATCCAGGAACTTGTGGGATCTGTTCCGGAAGGATTCAATGAATACTTTGCAAGCCGATTCCCAAGGCTATTAATTGAAGTGTATAAAGTTATATGCAAGCATTGCAAAGAAGAACAATGTTTTGATAGGTATTTTAAGAAAATTGATTAG 2736 0.4119 MKPLYRHILLFLSILCAVVLQFFVTLFSFNDVSSHPLPPPISQTPLLKLHHHLRLPQQQQQLKALPSPSSRSLLSLSPKPTTALVAALDGTMYLVDKQENGPTRVIWSFSTGSPIYHSYQAPIHKDSGKENGSAARISGSVECGDDWSLYMHDKHFGKMKISESIAEYVARTPTFSDDGAVTLGSKRSTLFEVDVKTGRIIQTHTMSDSDNSSTSWSDDEKSDTDILRTKKKDLANPAELNSPELLLKIFRTDYSLRSVGPSSGVVLWTMTVSEFEAVLLCQHTSFDADGEYVSDSGFSFAMPYPCQEIQPVFRLRKNFILEPSITERLPGSDHENNMPLMPASDLMLPSQEIFEKLNVDYGNTMLPVPIPNSLPSPEPKIVYPSRMHEWSTPLRFMMLMLLGFVLYNVVVKSKDMTKDQNQSELKISPAKKKKPRKSGKNNVAVDKKEKRLSSEDEDVLMRKDLDVEAGTWMQFNQXXXXGRRVGKLLVSNKEIAKGSNGTIVFEGIYEGRAVAVKRLVKTHHDVAFKEVQNLIVSDHHPNIVRWHGVEYDQDFVYLALERCTCSLDDLIQIYSDISDNPLFWKSQSFKSSVKAQIDTGKDNMHGLWKANGYPSPLLLKLMRDVVSGVVHLHELGIIHRDLKPQNVLIIKERSLCAKLSDMGISKRLPEDMSSLGHNATGAGSSGWQAPEQLGQGRQTRAMDLFSLGCVLFFCMTGGRHPFGERLERDVNIVKNRKDLFLVEFIPEAEDLVSSLLNPNPDTRPKAIEVLHHPFFWSPEMRLSFLRDTSDRVELEDREANSVLLNALESIGTVALGAKWDEKLEMAFLNNIGRYRRYKYDSVRDLLRVMRNKLNHYRELPQEIQELVGSVPEGFNEYFASRFPRLLIEVYKVICKHCKEEQCFDRYFKKID 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211747g00003 911 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 779 911 - -
Stsc211747g00003 911 SMART PGNneu 840 894 - -
Stsc211747g00003 911 Gene3D KEN domain 779 911 IPR038357 -
Stsc211747g00003 911 PANTHER IRE1-RELATED 159 909 IPR045133 GO:0004521|GO:0004674|GO:0030968
Stsc211747g00003 911 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 481 561 - -
Stsc211747g00003 911 Gene3D - 67 300 IPR015943 GO:0005515
Stsc211747g00003 911 Pfam Protein kinase domain 492 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211747g00003 911 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Stsc211747g00003 911 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 600 777 - -
Stsc211747g00003 911 Gene3D Transferase(Phosphotransferase) domain 1 603 777 - -
Stsc211747g00003 911 Pfam Ribonuclease 2-5A 781 907 IPR010513 GO:0004540|GO:0006397
Stsc211747g00003 911 ProSiteProfiles KEN domain profile. 778 909 IPR010513 GO:0004540|GO:0006397
Stsc211747g00003 911 CDD RNase_Ire1 779 907 - -
Stsc211747g00003 911 FunFam Inositol requiring 1-1 67 287 - -
Stsc211747g00003 911 Gene3D Phosphorylase Kinase; domain 1 475 561 - -
Stsc211747g00003 911 SUPERFAMILY DPP6 N-terminal domain-like 68 222 - -
Stsc211747g00003 911 ProSiteProfiles Protein kinase domain profile. 489 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211747g00003 911 SMART serkin_6 489 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211747g00003 911 SUPERFAMILY Protein kinase-like (PK-like) 492 790 IPR011009 -
Stsc211747g00003 911 MobiDBLite consensus disorder prediction 421 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211747g00003 Stsc-Chr211747 18149 23363 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211747g00003 515 774 MAP Kinase Kinase Kinase AT3G06030 27.273 6.74e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Stsc211747g00003 Pkinase 1.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211747g00003 K08852 - gmx:100788389 1178.31