Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211747g00002 ATGGGTCTGCAGCACGAATCAGCGGGTCTGTGGAATGCGGGGATGACTGGTCATTGTACATGCATGATAAACACTTTGAAAATCTCAGAATCAATTGCAGAATATGTTGCTCGTACACCTACCTTTTCAGATGATGGAGCAGTTACACTTGGATCCAAGAGAAGCACTTTGTTTGAAGTTGATGTTAAAACCGGAAGGATCATTCAAACCCATACTATGTCTGATTCTGATAATTCTTCTACATCTTGGAGTGATGACGAGAAGAGTGATACAGATATCCTTAGAACAAAGAAAAAGGATCTTGCTAATCCTGCAGAGCTAAATTCGCCAGAGTTGCTACTCAAGATATTTAGGACAGATTATTCTCTTCGATCTGTTGGTCCTAGTTCAGGAGTAGTTTTGTGGACTATGACCGTATCTGAATTCGAGGCTGTATTATTATGCCAGCATACTTCATTTGATGCCGATGGTGAGTATGTTTCTGACAGTGGGTTCAGTTTTGCGATGCCATATCCATGTCAAGAGATCCAGCCAGTCTTTCGCTTGCGAAAGAATTTTATACTAGAACCCTCGATCACTGAAAGGTTGCCTGGTTCTGATCATGAAAACAATATGCCTTTGATGCCTGCGTCAGATTTGATGCTTCCTTCACAAGAGATTTTTGAAAAATTAAATGTTGATTATGGTAATACAATGCTTCCTGTGCCAATACCAAATTCTTTGCCTTCGCCGGAACCAAAAATTGTGTATCCAAGCCGAATGCATGAATGGTCAACACCGTTGCGTTTTATGATGCTAATGCTTCTGGGCTTTGTCCTCTATAATGTAGTTGTTAAAAGTAAAGATATGACAAAGGACCAAAACCAGTCTGAGTTGAAGATTTCACCTGCTAAGAAAAAGAAGCCACGTAAATCAGGAAAGAACAACGTAGCAGTTGACAAAAAGGAAAAGCGTCTGTCCTCCGAAGATGAGGATGTGCTGATGCGAAAGGATCTCGATGTAGAAGCGGGCACATGGATGCAATTTAACCAAGNNNNNNNNNNCGGACGCAGGGTTGGTAAACTGCTTGTGTCAAATAAAGAAATTGCTAAGGGAAGCAACGGTACCATCGTCTTTGAGGGAATATATGAAGGTCGGGCAGTTGCTGTCAAGCGTTTGGTCAAGACTCATCATGATGTAGCCTTCAAAGAAGTCCAAAATCTCATTGTATCTGATCATCACCCAAACATTGTTCGATGGCATGGGGTAGAATATGATCAAGATTTTGTTTACCTTGCTCTGGAAAGATGTACATGCAGCTTGGATGATTTAATTCAAATTTATTCGGATATATCAGATAACCCTCTGTTTTGGAAGAGCCAATCTTTCAAATCTTCTGTTAAGGCCCAAATTGATACAGGGAAGGATAATATGCATGGTCTGTGGAAAGCCAATGGCTATCCATCACCTCTATTACTGAAATTGATGAGGGATGTTGTTTCTGGGGTAGTTCATTTGCATGAACTAGGAATAATACATAGAGATTTGAAACCCCAAAATGTTTTGATAATCAAGGAAAGATCCTTGTGTGCAAAGCTTTCTGATATGGGCATCAGCAAACGTCTCCCTGAAGATATGTCTTCTTTGGGTCATAACGCTACTGGGGCTGGCAGCTCAGGTTGGCAAGCACCAGAACAACTTGGTCAAGGACGCCAAACACGGGCCATGGATTTATTTAGCTTAGGTTGTGTCCTCTTTTTCTGTATGACTGGGGGGAGACATCCGTTTGGAGAACGGCTAGAACGTGATGTTAATATTGTGAAAAATAGAAAGGATCTTTTCTTAGTGGAGTTCATTCCTGAAGCAGAAGACCTAGTTTCTAGTTTACTGAACCCTAACCCTGATACTAGGCCGAAGGCAATTGAAGTATTACACCATCCATTTTTTTGGAGTCCAGAAATGAGACTTTCATTTTTACGTGACACCAGTGATAGGGTGGAACTAGAAGATAGGGAGGCTAATTCTGTTCTTCTGAACGCATTAGAAAGCATTGGTACAGTTGCTTTAGGTGCAAAATGGGACGAAAAGTTGGAAATGGCTTTTCTTAATAACATTGGTCGATATCGACGGTACAAGTATGATAGTGTTCGAGACTTGTTGCGGGTCATGAGGAACAAACTAAATCATTATAGAGAGTTGCCTCAAGAAATCCAGGAACTTGTGGGATCTGTTCCGGAAGGATTCAATGAATACTTTGCAAGCCGATTCCCAAGGCTATTAATTGAAGTGTATAAAGTTATATGCAAGCATTGCAAAGAAGAACAATGTTTTGATAGGTATTTTAAGAAAATTGATTAG 2337 0.4044 MGLQHESAGLWNAGMTGHCTCMINTLKISESIAEYVARTPTFSDDGAVTLGSKRSTLFEVDVKTGRIIQTHTMSDSDNSSTSWSDDEKSDTDILRTKKKDLANPAELNSPELLLKIFRTDYSLRSVGPSSGVVLWTMTVSEFEAVLLCQHTSFDADGEYVSDSGFSFAMPYPCQEIQPVFRLRKNFILEPSITERLPGSDHENNMPLMPASDLMLPSQEIFEKLNVDYGNTMLPVPIPNSLPSPEPKIVYPSRMHEWSTPLRFMMLMLLGFVLYNVVVKSKDMTKDQNQSELKISPAKKKKPRKSGKNNVAVDKKEKRLSSEDEDVLMRKDLDVEAGTWMQFNQXXXXGRRVGKLLVSNKEIAKGSNGTIVFEGIYEGRAVAVKRLVKTHHDVAFKEVQNLIVSDHHPNIVRWHGVEYDQDFVYLALERCTCSLDDLIQIYSDISDNPLFWKSQSFKSSVKAQIDTGKDNMHGLWKANGYPSPLLLKLMRDVVSGVVHLHELGIIHRDLKPQNVLIIKERSLCAKLSDMGISKRLPEDMSSLGHNATGAGSSGWQAPEQLGQGRQTRAMDLFSLGCVLFFCMTGGRHPFGERLERDVNIVKNRKDLFLVEFIPEAEDLVSSLLNPNPDTRPKAIEVLHHPFFWSPEMRLSFLRDTSDRVELEDREANSVLLNALESIGTVALGAKWDEKLEMAFLNNIGRYRRYKYDSVRDLLRVMRNKLNHYRELPQEIQELVGSVPEGFNEYFASRFPRLLIEVYKVICKHCKEEQCFDRYFKKID 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211747g00002 778 CDD RNase_Ire1 646 774 - -
Stsc211747g00002 778 SUPERFAMILY Protein kinase-like (PK-like) 359 657 IPR011009 -
Stsc211747g00002 778 Pfam Ribonuclease 2-5A 648 774 IPR010513 GO:0004540|GO:0006397
Stsc211747g00002 778 MobiDBLite consensus disorder prediction 288 316 - -
Stsc211747g00002 778 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 646 778 - -
Stsc211747g00002 778 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 348 428 - -
Stsc211747g00002 778 SMART serkin_6 356 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211747g00002 778 ProSiteProfiles KEN domain profile. 645 776 IPR010513 GO:0004540|GO:0006397
Stsc211747g00002 778 PANTHER IRE1-RELATED 27 776 IPR045133 GO:0004521|GO:0004674|GO:0030968
Stsc211747g00002 778 Gene3D Phosphorylase Kinase; domain 1 342 428 - -
Stsc211747g00002 778 SMART PGNneu 707 761 - -
Stsc211747g00002 778 Pfam Protein kinase domain 359 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211747g00002 778 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 467 644 - -
Stsc211747g00002 778 ProSiteProfiles Protein kinase domain profile. 356 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211747g00002 778 Gene3D KEN domain 646 778 IPR038357 -
Stsc211747g00002 778 Gene3D Transferase(Phosphotransferase) domain 1 470 644 - -
Stsc211747g00002 778 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211747g00002 Stsc-Chr211747 18149 23457 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211747g00002 382 641 MAP Kinase Kinase Kinase AT3G06030 27.273 3.61e-18 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Stsc211747g00002 Pkinase 9.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211747g00002 K08852 - gmx:100788389 1051.2