Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211745g00006 ATGGATAGTAATAAGCTGAGAAACAGGAGTAGTAGGAGTAGTGGCAGTAGCAGAAATCTGTATATGAAGGAACAAGAAGACAATGATGGTGGCTCTCAACAAGAAAACATCGTGGATTCCCCTCCTTCTTCAAATAATTCCAACCTCTTCAACATTGATGGCTTGGTTACTACTTCTTCCTCACCATCATCATCTTCAAGTAAGAGAAGGCGAGGGATAGAGAAAAGGGTAGTGCATATAAGAATAAAGGAGGGAGGAGAAGGGCCGAGGCTAAAAGGGGAAAACAACACAGCACCGCCGTCAGATTCATGGGCATGGAGGAAGTACGGGCAGAAACCAATAAAAGGTTCACCGTACCCGAGAGGATACTACAGATGCAGCAGCTCAAAAGGGTGTCCGGCGAGAAAACAAGTTGAGAGAAGCAGACTGGACCCCACCATGCTCGTAGTTACATATTCATGCGAACACAACCATCCATGGCCTCCTTCTTCACGCAACCACAACAACACTAATAGATCCACCACTAACAAGAAGCCTCAAAAACCCTGCGAGGAGTTACAGTTACTTGCGGACCCGGTTGAACCGGAAGAGGACAAGTTTCCGGATCTTGAAGGCCACGACTCCATCATTCACGACCTTGGCTGGTTCCGCGACATCTCCGGGGCTCCAACTACCTCATCGACCGCCGTACTTGACAGCCCTATATTCTCTGGCTACGATGCCGACGTGGCGGCGGCGTCGGTGCTGGTCCCCATGGGGGAGGAGGAGGACGACTCGCTGTTTGCGGACCTCGGGGAGCTTCCCGAGTGCAACCTTGTGTTCCGGAGGGGAATGATGGAGACGGCGGAGCAACGGCGGCGCTATGCGGAGCCTTGGTGCGGGACCACAAGTTGA 894 0.5179 MDSNKLRNRSSRSSGSSRNLYMKEQEDNDGGSQQENIVDSPPSSNNSNLFNIDGLVTTSSSPSSSSSKRRRGIEKRVVHIRIKEGGEGPRLKGENNTAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRLDPTMLVVTYSCEHNHPWPPSSRNHNNTNRSTTNKKPQKPCEELQLLADPVEPEEDKFPDLEGHDSIIHDLGWFRDISGAPTTSSTAVLDSPIFSGYDADVAAASVLVPMGEEEDDSLFADLGELPECNLVFRRGMMETAEQRRRYAEPWCGTTS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211745g00006 297 SMART WRKY_cls 100 160 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211745g00006 297 MobiDBLite consensus disorder prediction 156 182 - -
Stsc211745g00006 297 Pfam WRKY DNA -binding domain 102 159 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211745g00006 297 Gene3D WRKY domain 89 162 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211745g00006 297 MobiDBLite consensus disorder prediction 157 181 - -
Stsc211745g00006 297 MobiDBLite consensus disorder prediction 31 67 - -
Stsc211745g00006 297 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 15 272 IPR044810 GO:0003700
Stsc211745g00006 297 SUPERFAMILY WRKY DNA-binding domain 97 161 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211745g00006 297 MobiDBLite consensus disorder prediction 1 108 - -
Stsc211745g00006 297 FunFam WRKY transcription factor 65 89 161 - -
Stsc211745g00006 297 ProSiteProfiles WRKY domain profile. 95 161 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211745g00006 Stsc-Chr211745 45212 46930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211745g00006 28 275 WRKY Transcription Factor Family AT1G29280 50.391 3.58e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc211745g00006 WRKY 3.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211745g00006 - - ahf:112734976 396.741