Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211742g00004 ATGGAGGATGAGTCCAGCGAGAATCGGAAGCAAGCGAGGCTCGCGATTCTTGAGCTCGCAAACATGATAAGCGTTCCGATGGCGCTCAACGCGATCGTACGCCTCAACGTCGCCGACGCCATCTGGCAGGGTGGCGCCAACAACCACCTTTCCGCCATCGAGATCCTGACTCGAGTCCTCCCCGACGGAAACGGCGATGCCGAGAACCTCCAGCGCTTGCTCCGATTGCTAGCGAGCTACGGCGTCTTCAGCGAGCATTTTCCTTCCGGCGGCGGCGAAGGAGAGATGAAGTACTCGCTAACCGACGTAGGCAAAACGCTGGTGACGGATAAGGAAGGGTTATCTTTTGCGCCGTATGTACTTCAGCACCACCAGGATGCGTTGATGAGAGCATGGCCGTTGGTGCATGAGGCAGTGGTTGATCCTTCCAAGGAGCCCTTCGAGAGGGCCAATGGAGAGCCAGCATACAGTTACTACCTCAAACAAGGCAATATGAATGAGCTCATGGTCAAGGCCATGTCTGGGGTCTCTGTGCCCTTCATGAGGGCCATGCTCCAGGCCTACGACGGCTTCCGTGGAGTCCAGAGGCTTGTGGATGTTGGTGGCAGCGGCGGCGACTGCCTCCGGATGATTCTCCAGAAACATCCCAATGTTAAGGAAGGCATCAATTTTGACCTCCCTGAAGTGGTGGCCAAAGCACCACAAATTCCAGGTGTAACCCATGTGGGCGGTGACATGTTCAAATCCATTCCTCAAGCTGATGCGATCTTCATGAAGTGGGTGCTTACAACATGGACAGACGATGAGATCAAGAAGATAATGCAAAACTGCTACAACTCACTCCCAGAAGGAGGGAAGCTCATTGCATGCGAGCCGGTGCTGCCGGAGAACTCGGACGACAGCCACAGAACAAGGGCGTTGCTTGAAGGCGACATATTCGTCATGACAATATACAGAGCCAAAGGGAAACACAGGACTGAAGAACAGTTCAGGAAGCTTGCAGTTTCTGTAGGCTTCCCTAGTTTCCGGGCATTCCATGTTGATCACTTCTACACCGTGCTCGAGTTTCAGAAATGA 1077 0.5385 MEDESSENRKQARLAILELANMISVPMALNAIVRLNVADAIWQGGANNHLSAIEILTRVLPDGNGDAENLQRLLRLLASYGVFSEHFPSGGGEGEMKYSLTDVGKTLVTDKEGLSFAPYVLQHHQDALMRAWPLVHEAVVDPSKEPFERANGEPAYSYYLKQGNMNELMVKAMSGVSVPFMRAMLQAYDGFRGVQRLVDVGGSGGDCLRMILQKHPNVKEGINFDLPEVVAKAPQIPGVTHVGGDMFKSIPQADAIFMKWVLTTWTDDEIKKIMQNCYNSLPEGGKLIACEPVLPENSDDSHRTRALLEGDIFVMTIYRAKGKHRTEEQFRKLAVSVGFPSFRAFHVDHFYTVLEFQK 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211742g00004 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 356 IPR029063 -
Stsc211742g00004 358 Pfam O-methyltransferase domain 136 339 IPR001077 GO:0008171
Stsc211742g00004 358 PANTHER O-METHYLTRANSFERASE 19 345 IPR016461 GO:0008168
Stsc211742g00004 358 Gene3D Vaccinia Virus protein VP39 112 358 IPR029063 -
Stsc211742g00004 358 FunFam Caffeic acid 3-O-methyltransferase 113 358 - -
Stsc211742g00004 358 Gene3D - 1 111 IPR036388 -
Stsc211742g00004 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 358 IPR016461 GO:0008168
Stsc211742g00004 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
Stsc211742g00004 358 SUPERFAMILY "Winged helix" DNA-binding domain 8 110 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211742g00004 Stsc-Chr211742 19397 23262 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211742g00004 1 358 Monolignol Biosynthesis Gene Families AT3G53140 74.033 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211742g00004 - - gmx:100784957 612.068