Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211739g00009 ATGGCTTCGAATGAGATTCTGACATCTGCTGCAACAAACCATGAAGTTCTGACTGAAGCAGCGAAGATGATGGAGAGTAAGGAAGAAGAAGAAGAAAAGAAGGAGATGAATCGGAAGGAGAAACGAAAGGCATTAAAGAAAATGAAACGGAAGCAGATCAGGAAGGAGATTGCAATTATGGAGCGGGTAGAGGAGGAGGCTTGCCTCAACGATCCCGAAGAGCAGAGGAGGATGCAACTCCTGGAGGAGCAGGAGGCTGAGAGGATGGAGAGAGACAGGATGCTTTTTGAGGAAAGAGAGAGGGCTTGGATGGAGTCACAGCAGAGGATTCAGCAGCAGCAGGAGCAGGAGCAGGATCAACAACAGCAACAGATAGACCTTCTTGAAGAATCACAGTCGGCACCCAATGGTAATGGTAGTGACAATGATGATGATCAATGGGAATATGTGGAGGAAGGGCCTCCTGAGATTATCTGGCAAGGAAATGAGATTATCTTTAAGAGGAACAAAGTGAGGGTCAGGGTTTCAAATAAGGAACCAAATCAAAATCAGCATGCTGATGATGCTGATAGACCTACCTCAAATCCTTTACCCCCAGAAGGTCACTCAAATTCATCTGCTCAGCTGTTGCTGGAGAATGTTGCACAACAAGTACCCAATTTTGGAACAGAACAGATTATTGCGGTGGAGGCTCATGGTTTTGGTCTTGGTGGGTCAAGGTTAACGATATTAGCTGTTTTTTTGGGCAATATCCAAGCCATGGATTGTGAAGCTATGCTGCAGATATCATCAAATGATTTGAGATTATTGCAGCAAGACAAAAAAGTGGATGAATACACGGATGAGGAGGTTGATCGCTCTTTTGAAGAATTTTATGATGATGTTCATACAGAGTTCCAGAAATTTGGAGAAATTGTGAACTTCAAGGTGTGTAAAAATGGCGCATTTCACTTGCGAGGAAATGTCTACGTGCATTATAAATTTTTGGACTCTGCTTTGCTTGCCTACAACACTATTAATGGGCGCTACTTTGCTGGGAAACAGGTAAGTTGTAACTTCGTTAGTTTGACAAGATGGAAGGCTGCCATATGTGGCGAGTATATGAAGTCAGGTTACATGACGTGCTCCCATGGCTCAGCATGCAATTTTATACACTGTTTCCGTAATCCTGGTGGCGACTATGAATGGGCTGATTCTGATCGACCACCCCCAAAATATTGGGTGAAAAGGATGGCAGCATTATTTGGTTATTCTGATGATTATGATGCTTTAGGAGAGCAAGAAAATTTGAGTTTCCGAAAGAATACCGGCGAGATGTCAAAATCAGATTCTTTCAGGTATCGCTCAAGTAGATCAAGATCTAGGGAGAGGGATCAGTTGAAAAGTTATTCTAGTAGAAGAAAACATGGAGATGAACGAAGGCAAAGAACTCCTGATGAGGGATTAAATGGCAATTCAAAACATAATCATAAAATTAAGCACAAAACTCCGGTTTCTGATTCCAATAGGGAATTGTTGGAAAAATATGAAAATAGGGAAGGTCACCATAAACATTCTAGAAAAAGCTCGTTACATAGTGACAAGGATGGCATTCGCAGAAGCCATGACGAGGAGTTTGATACAGATTTGGCTCCAACTGGTAAGGACGATGTAGTAGAACATGGAAAAGAACCAAGAAGATCTAAGAAGGGGAAGAGAGATAGAAGGGATTCAGAGCACCATACCAGTAGAAGGAAAAGCTCACAGCATCATAGTAGGGACAATAGAACCGGTGAAGCTGAATCTAATAAAGATTTGTTTGATCAAGGAGACCTGGAACCCCATGATAGCTCTTGGAAAAGCTCGAGACACAACAGGTCTGGTCATCAGGGAGACAAGAAGGACTATGATAGTGAACTTGATGAAGTTGTTGAAGATTGGTCTCAGAGGGGGAGACATAGAAGATCTGGCTATCGAGATGACTAA 1965 0.426 MASNEILTSAATNHEVLTEAAKMMESKEEEEEKKEMNRKEKRKALKKMKRKQIRKEIAIMERVEEEACLNDPEEQRRMQLLEEQEAERMERDRMLFEERERAWMESQQRIQQQQEQEQDQQQQQIDLLEESQSAPNGNGSDNDDDQWEYVEEGPPEIIWQGNEIIFKRNKVRVRVSNKEPNQNQHADDADRPTSNPLPPEGHSNSSAQLLLENVAQQVPNFGTEQIIAVEAHGFGLGGSRLTILAVFLGNIQAMDCEAMLQISSNDLRLLQQDKKVDEYTDEEVDRSFEEFYDDVHTEFQKFGEIVNFKVCKNGAFHLRGNVYVHYKFLDSALLAYNTINGRYFAGKQVSCNFVSLTRWKAAICGEYMKSGYMTCSHGSACNFIHCFRNPGGDYEWADSDRPPPKYWVKRMAALFGYSDDYDALGEQENLSFRKNTGEMSKSDSFRYRSSRSRSRERDQLKSYSSRRKHGDERRQRTPDEGLNGNSKHNHKIKHKTPVSDSNRELLEKYENREGHHKHSRKSSLHSDKDGIRRSHDEEFDTDLAPTGKDDVVEHGKEPRRSKKGKRDRRDSEHHTSRRKSSQHHSRDNRTGEAESNKDLFDQGDLEPHDSSWKSSRHNRSGHQGDKKDYDSELDEVVEDWSQRGRHRRSGYRDD 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211739g00009 654 MobiDBLite consensus disorder prediction 439 487 - -
Stsc211739g00009 654 MobiDBLite consensus disorder prediction 1 15 - -
Stsc211739g00009 654 SUPERFAMILY RNA-binding domain, RBD 287 356 IPR035979 GO:0003676
Stsc211739g00009 654 Coils Coil 104 131 - -
Stsc211739g00009 654 MobiDBLite consensus disorder prediction 434 654 - -
Stsc211739g00009 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 356 IPR000504 GO:0003723
Stsc211739g00009 654 SMART c3hfinal6 358 387 IPR000571 GO:0046872
Stsc211739g00009 654 MobiDBLite consensus disorder prediction 178 204 - -
Stsc211739g00009 654 MobiDBLite consensus disorder prediction 585 654 - -
Stsc211739g00009 654 FunFam Zinc finger CCCH domain-containing protein 5 252 354 - -
Stsc211739g00009 654 Gene3D - 258 354 IPR012677 -
Stsc211739g00009 654 ProSiteProfiles Zinc finger C3H1-type profile. 358 388 IPR000571 GO:0046872
Stsc211739g00009 654 MobiDBLite consensus disorder prediction 1 51 - -
Stsc211739g00009 654 MobiDBLite consensus disorder prediction 523 577 - -
Stsc211739g00009 654 MobiDBLite consensus disorder prediction 495 517 - -
Stsc211739g00009 654 MobiDBLite consensus disorder prediction 69 89 - -
Stsc211739g00009 654 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 268 527 IPR009145 GO:0000398|GO:0003723|GO:0089701
Stsc211739g00009 654 SMART rrm2_1 284 352 IPR003954 GO:0003676
Stsc211739g00009 654 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 359 386 IPR000571 GO:0046872
Stsc211739g00009 654 PRINTS U2 auxiliary factor small subunit signature 313 335 IPR009145 GO:0000398|GO:0003723|GO:0089701
Stsc211739g00009 654 PRINTS U2 auxiliary factor small subunit signature 285 300 IPR009145 GO:0000398|GO:0003723|GO:0089701
Stsc211739g00009 654 PRINTS U2 auxiliary factor small subunit signature 340 364 IPR009145 GO:0000398|GO:0003723|GO:0089701
Stsc211739g00009 654 PRINTS U2 auxiliary factor small subunit signature 378 390 IPR009145 GO:0000398|GO:0003723|GO:0089701
Stsc211739g00009 654 MobiDBLite consensus disorder prediction 20 39 - -
Stsc211739g00009 654 Coils Coil 14 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211739g00009 Stsc-Chr211739 47688 54271 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc211739g00009 zf-CCCH 9.8e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211739g00009 K24273 - gmx:100789091 523.472