Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211738g00005 ATGCCAGAACCTTCATCTTCTTTCAAAGTTGTTCAAGTTTGTTCTGTTTCACCACCGCCACAAAATGGAACAACAACAACAACAACCTCTTCTTCAATCTCTATGCCACTCTCCTTCTTTGACATCATATGGCTACGGTTCCCACCCGTTGAGCGTCTTTTCTTCTACAAATTCCCAAACTACCCTTCTTCTAATAATTCATTCTATGACTCTATCCTCCCAAATCTCAAACACTCTCTTTCCCTAACACTCCAACACTTCCTTCCCCTCATTGGTAACATTATTTGGCCTTCAGATTCTCCCAAACCAGTGATTCGTTATGTCCCTAATCAAGATTCTGTTACCTTAACCATAGCAGAGTCCAATGATAATGATGATGGTGCTAAAGTTTTTGAACAACTTTGTTCTAATTCATGTGAAGCTTCACAACGTTATTTCTTGGTACCCCAATTGGCCATTTCTCATGAAAAAGCTTCTTTGTTAGCATTACAAGTAACTTTGTTCCCAAAGTTTGGATTTTGCATTGGAATCTCAACACACCATGCAGCCATGGATGGAAAGTCTTCAACTATGTTCATGAAAGCGTGGTCTTACACATGCTCCAAGCTTTTAGAATCCCCATCTTTTCCATCATCATCATTACCATTACCTGAGAATCTTACGCCGTTTTTGGATAGGTCACTGATAAAGGACCCAACAAAAATCGGTGAAAGTTATGGAGATTCATGGCTGAATCATGGTGGAACAAACAACAACCGAAGTCTCAAAGTGTTTGATTTCCCTAATGAATTTGCAAAAGAAGGATATGGGGTTAAGGCTTTGTTTGAATTGAGCCCCACACAGATCATGAAGCTGAAGGAGCATGCAAAATCCAAGATGGGAGGAAGAGGAACAAAAAGTGTGAAGCTTTCAACTTTTTCAGTTACTTGTGCTTATGTGTTATCATGTTTGGTCAGAACAGAAGAGCAACAGTTATTGGAAAACGTGGTTAAAAAAGTGTTGCTCATCTTTAGTGTGGATTGTAGAACAAGGTTAGACCCTCCAATTGTTTCAACATATTTTGGGAATTGTATTGCTGGGGAAAGGGTTGAGGCAGAGACAAAAGGGTTATTGTTGGGAAACATTGTTAATGATGGATTCATGGTTGCTTTAGAGGCAATTATTGAAGGATTGAAGAGGGTTGAAGATGGGTCAGTGATGAATGGAGCAGAGACTTGGCTTTCAGATATCATGTTTAGTTTTGTTGAAGGAGGGAAGATATATTCCATTGCTGGATCTCCGAGGTTTGGAGTTTATGATGTTGATTTTGGTTATGGAAGGCCTGAGAAAGTGGATATGACTTCAACTGATAAGACAAGAGCTTTTTCTCTTTCTGAGAATAAAGATAACAATGGTGGAATAGAGATTGGGTTGGCAATGGAAAAGAGTGATATGGAAGCTTTCTCTTCCTTTTTCCATGAAGGACTTCAATCCTTGTAA 1479 0.3922 MPEPSSSFKVVQVCSVSPPPQNGTTTTTTSSSISMPLSFFDIIWLRFPPVERLFFYKFPNYPSSNNSFYDSILPNLKHSLSLTLQHFLPLIGNIIWPSDSPKPVIRYVPNQDSVTLTIAESNDNDDGAKVFEQLCSNSCEASQRYFLVPQLAISHEKASLLALQVTLFPKFGFCIGISTHHAAMDGKSSTMFMKAWSYTCSKLLESPSFPSSSLPLPENLTPFLDRSLIKDPTKIGESYGDSWLNHGGTNNNRSLKVFDFPNEFAKEGYGVKALFELSPTQIMKLKEHAKSKMGGRGTKSVKLSTFSVTCAYVLSCLVRTEEQQLLENVVKKVLLIFSVDCRTRLDPPIVSTYFGNCIAGERVEAETKGLLLGNIVNDGFMVALEAIIEGLKRVEDGSVMNGAETWLSDIMFSFVEGGKIYSIAGSPRFGVYDVDFGYGRPEKVDMTSTDKTRAFSLSENKDNNGGIEIGLAMEKSDMEAFSSFFHEGLQSL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211738g00005 492 PANTHER - 8 491 - -
Stsc211738g00005 492 Gene3D - 270 492 IPR023213 -
Stsc211738g00005 492 Gene3D - 8 254 IPR023213 -
Stsc211738g00005 492 Pfam Transferase family 30 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211738g00005 Stsc-Chr211738 39966 41531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211738g00005 53 487 Monolignol Biosynthesis Gene Families AT5G48930 24.944 9.40e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211738g00005 - - ahf:112797053 779.245