Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211734g00010 ATGGCGAAGACAGAAGCAAAAGAGCCCTTGCTGTCAAGATCAGAGGATCTTGAAGCTCAAAAGTTCAGGAGGCAGTTAAAGAAGAGAAGGTTGCGCCGTGCTAGAAGTGCACCTTGCAACGATGCTGATTCGCCGGACACGAATGGCAATATACCAGTGCCCAGATCTGAGTCAATATTTGGGAATATACATCCAAGCTTTAGAAGAGTTGCCATGTACCTTACATTGTATATAGGAATAGGTGCTGTTGTATTCTACCTTGTTGGGAACCAGATCAAGGGGCTGAAAACAGATGGGGTTCTTGATGCTATATACTTCACAGTTGTGACAATGACCACAGTTGGTTATGGAGATATCGTTCCGAATAGCAACCTTACAAAGCTACTCGCGTGCGCTTTTGTTTTCTCCGGAATGGCATTGGTTGGACTAATCCTAGGCCAAGCAGCAGATTACTTGGTTGAGAAGCAAGAAGTTTTGCTTGTTAAAGCTATGCACATGCACCAACATGTTGGTGAAAGAGAAATTCTAAAGGAGGTTGAGGTGAACAAAGCAAGATACAAATTCCTTTTGGCCTTTTCCCTTCTCTTGATTATGATCATAGTGGGGACGGTTTTCTTGGTCACGGTTGAGAAATTGGAAGTCATCGACGCGTTTTACTGCGTTTGTTCTACTCTTACAACCCTTGGATATGGTGATAAGAGTTTCTCAACTGAAGCAGGTAGAATATTTGCTGTGTTTTGGATATTGGCAGGTACAATTTCTTTGGCTCAGGTGTTCCTCTACATTGCTGAGCTTAACACCGAAAGCCGACAAAAGGCAATTGTGAAGTGGGTTCTTTCGAAGAAGATGACCAATTTGGACTTGGAGGCTGCAGATCTTGATGATGATGGCAGTGTTGGGGCTGCTGAATTTGTTGTTTATAAGCTGAAAGAGATGGGGAAGATTAGTCAAGAAGATATATCAGTTTTGTTGCAGGAGTTTGAAGAACTTGATGTTGATGAGTCTGGTACACTTTCAGTTTCTGATTTAGCATTTGCTCAGTCATCTTAG 1050 0.4257 MAKTEAKEPLLSRSEDLEAQKFRRQLKKRRLRRARSAPCNDADSPDTNGNIPVPRSESIFGNIHPSFRRVAMYLTLYIGIGAVVFYLVGNQIKGLKTDGVLDAIYFTVVTMTTVGYGDIVPNSNLTKLLACAFVFSGMALVGLILGQAADYLVEKQEVLLVKAMHMHQHVGEREILKEVEVNKARYKFLLAFSLLLIMIIVGTVFLVTVEKLEVIDAFYCVCSTLTTLGYGDKSFSTEAGRIFAVFWILAGTISLAQVFLYIAELNTESRQKAIVKWVLSKKMTNLDLEAADLDDDGSVGAAEFVVYKLKEMGKISQEDISVLLQEFEELDVDESGTLSVSDLAFAQSS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211734g00010 349 SUPERFAMILY EF-hand 252 345 IPR011992 -
Stsc211734g00010 349 Gene3D - 64 158 - -
Stsc211734g00010 349 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 100 321 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc211734g00010 349 MobiDBLite consensus disorder prediction 26 53 - -
Stsc211734g00010 349 SUPERFAMILY Voltage-gated potassium channels 66 171 - -
Stsc211734g00010 349 PRINTS Two pore domain K+ channel signature 109 137 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc211734g00010 349 PRINTS Two pore domain K+ channel signature 226 235 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc211734g00010 349 FunFam Calcium-activated outward-rectifying potassium channel 1 64 159 - -
Stsc211734g00010 349 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Stsc211734g00010 349 ProSitePatterns EF-hand calcium-binding domain. 292 304 IPR018247 -
Stsc211734g00010 349 SUPERFAMILY Voltage-gated potassium channels 181 281 - -
Stsc211734g00010 349 FunFam Two-pore potassium channel 1 168 276 - -
Stsc211734g00010 349 Gene3D - 168 279 - -
Stsc211734g00010 349 Pfam Ion channel 194 265 IPR013099 -
Stsc211734g00010 349 Pfam Ion channel 73 153 IPR013099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211734g00010 Stsc-Chr211734 38706 41051 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211734g00010 52 349 Ion Channels AT5G55630 64.094 2.09e-144 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211734g00010 K05389 - gmx:100777388 497.278