Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211734g00009 ATGACGAACACAGAAGCAACAGAGCCCTTGCTGTCAGGATCAGAGGATCCTGAAGCTCAAAGGTTCACAAGGCAGTCAAGGAAGAGAAGGTTGCGCCGTGCTAGAAGTGCACCTTGCAATATCATTGCTGATTCCCCGGACAAGAATTGCAATATACCAGAGCCAAGATCAGAGTCAATATTTGGGAATATACATTCAAGCTTTAGAAAAGTTGCTATGTACTACCTTATATTGTATTTAGGAATAGGTTCTGTTGTATTCTACCTTGTTAGGGACCAGATGAAGGGGCTGAAAATAAATGGGGTTCTTGATGCTATATACTTCACAGTTGTAACAATGACAACAGTTGGTTATGGAGATATTGTTCCGGATAGCAGCCTTACAAAGCTCCTCGCGTGCGCTTTTGTTTTCTCTGTAATGCCATTGGTTGGACTAATCCTAGGCAAAGCAGCAGATTACTTGGTTGAGAAGCAACAAGTTTATCTGGTTAAAGCTATGAAAATTCACCAAAATGTTAGTCAAAGAGAAATCCTAAAGAAGGTTGAAGTGAACAAAGCAAGATACAAATTCCTTTTGGCCTTTTTCCTTCTCTTGATTATGATCATAGTAGGGACTGTTTTCTTGGTCATGGTTGAGAAATTGACAGTCATCGATGCGCTTTACCGCGTTTGTTCTACTGTCACAACCCTGGGATATGGTGGTAAGAGTTTCTCAACTGAAGCTGGTAGAGTATTTGCAGTGGTTTTTATATTGGCAGGTACAATTTCTTTGGCTCTGATGATCCTCTACATTGCTGAGCTTAACACTGAATGCCAACAAAAGGCAATTGTGAAGTGTGTTCTTTTGAAGAAGATGACCATTTTGGACTTGGAGGAAGCAGATCTTGATGGTGATGGCACTGTTAGGGCTGCTGAATTTATTATTTATAAGCTCAAAGAGATGGGGAAGATCAGTCAAGAAGCTGTATCAGTTTTGATGCACGAGTTTGAAGAACTTGATGTTGATCAGGATGGTACACTCTCAGTTTCTGACTTAACAGATCATGTCGGGAATATTTAG 1059 0.4051 MTNTEATEPLLSGSEDPEAQRFTRQSRKRRLRRARSAPCNIIADSPDKNCNIPEPRSESIFGNIHSSFRKVAMYYLILYLGIGSVVFYLVRDQMKGLKINGVLDAIYFTVVTMTTVGYGDIVPDSSLTKLLACAFVFSVMPLVGLILGKAADYLVEKQQVYLVKAMKIHQNVSQREILKKVEVNKARYKFLLAFFLLLIMIIVGTVFLVMVEKLTVIDALYRVCSTVTTLGYGGKSFSTEAGRVFAVVFILAGTISLALMILYIAELNTECQQKAIVKCVLLKKMTILDLEEADLDGDGTVRAAEFIIYKLKEMGKISQEAVSVLMHEFEELDVDQDGTLSVSDLTDHVGNI 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211734g00009 352 ProSitePatterns EF-hand calcium-binding domain. 333 345 IPR018247 -
Stsc211734g00009 352 Pfam Ion channel 196 267 IPR013099 -
Stsc211734g00009 352 Pfam Ion channel 75 155 IPR013099 -
Stsc211734g00009 352 SUPERFAMILY Voltage-gated potassium channels 71 167 - -
Stsc211734g00009 352 SUPERFAMILY EF-hand 290 347 IPR011992 -
Stsc211734g00009 352 Gene3D - 290 350 - -
Stsc211734g00009 352 SUPERFAMILY Voltage-gated potassium channels 181 291 - -
Stsc211734g00009 352 Gene3D - 63 161 - -
Stsc211734g00009 352 Gene3D - 168 282 - -
Stsc211734g00009 352 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 70 322 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc211734g00009 352 ProSiteProfiles EF-hand calcium-binding domain profile. 320 352 IPR002048 GO:0005509
Stsc211734g00009 352 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211734g00009 Stsc-Chr211734 36484 38091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211734g00009 53 345 Ion Channels AT5G55630 58.020 9.98e-118 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211734g00009 K05389 - gmx:100777388 417.927