Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211734g00006 ATGACGGTTCAGGTGAATTTAGCAGAAGAAGAAGGTTATTTCAATGGGAATAATGTTGATGACAGTAACAATAATGTGAATAGCTACATTAGTTGGGAGGATTTGGAAGTGGGAGAGGAAAGTTTGGAATTGAAATCAAAGAAAGAGTTAAGAGTTATTGTGGTTGATCAACATGGTAAGGGACATTCAAAAACTGTTCAAGGTGCTGTGAATATGGTTCCAGATCACAACAAAGAAAGGGTCAAAATTTACATTTATCCAGGAACTTATAGGGAGAAAGTGCTTGTGCCAAAAAGCAAACCTTATATTTCATTTATAGGTGAAAAAAATGGAACAGTAGGTGCTGTGATTACTTGGAACAGCAAATCATCTGATAAAGGCCCTAATGGCCAAACATTGGGAACTTATGGTTCAGCAACTGTTGGAATTGATTCTGATTATTTCTGTGCATCTCAGGTCACTTTTGAGAACTCAGTGGTTGCAATGCCTGGTGGAAATGGAATGCAAGCAGTGGCATTGAGGGTGAACAGTAACAGAGCCATGTTCTATAAAGTTAAGGTCAAAGGAACACAGGACACTCTCTTAGACAACACAGGAACACATTACTTTTATAAATGTTACATCCAAGGAAAGATTGATTTCATCTTTGGCAGTGCTAAATCACTCTATGAGAAATGTAGGCTTGAATCAATAGCTGAGAGTTTTGGAGCAATTGCAGCACATCACAGGGATTCAGCAAAACAAGACACAGGATTTTCATTTGTAGGATGCAAGATTAAAGGGAGTGGGAGTGTGTACCTTGGAAGAGCATGGGGTAACTATTCAAGAGTTATATACTCAAATTGCTACATGGATGATATCATCAATCCTCAAGGCTGGTCTGAATGGAACCATCCAGAAAGAAAAAAGACTGCAGTGTTTGGTGAATATAAGAATATGGGAAGAGGAGCAGATAGGAAAGAGAGAGTGCCATGGTCAAAAGCATTCAACTATGAAGAAGCAAGGCCTTTCCTTGGCAAGAGTTTCATCAATGGAGATCAATGGCTCAGACTCTAG 1056 0.3902 MTVQVNLAEEEGYFNGNNVDDSNNNVNSYISWEDLEVGEESLELKSKKELRVIVVDQHGKGHSKTVQGAVNMVPDHNKERVKIYIYPGTYREKVLVPKSKPYISFIGEKNGTVGAVITWNSKSSDKGPNGQTLGTYGSATVGIDSDYFCASQVTFENSVVAMPGGNGMQAVALRVNSNRAMFYKVKVKGTQDTLLDNTGTHYFYKCYIQGKIDFIFGSAKSLYEKCRLESIAESFGAIAAHHRDSAKQDTGFSFVGCKIKGSGSVYLGRAWGNYSRVIYSNCYMDDIINPQGWSEWNHPERKKTAVFGEYKNMGRGADRKERVPWSKAFNYEEARPFLGKSFINGDQWLRL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211734g00006 351 FunFam Pectinesterase 48 351 - -
Stsc211734g00006 351 Pfam Pectinesterase 53 346 IPR000070 GO:0030599|GO:0042545
Stsc211734g00006 351 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 46 350 - -
Stsc211734g00006 351 SUPERFAMILY Pectin lyase-like 52 349 IPR011050 -
Stsc211734g00006 351 Gene3D - 48 351 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211734g00006 Stsc-Chr211734 13681 15574 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211734g00006 23 303 Carbohydrate Esterase AT5G55590 57.807 2.75e-128 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211734g00006 K01051 - gmx:100804220 504.597