LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211734g00005	ATGATGACTAGTAGTTATAATAAGAAGAGAATATTATTGCTATTATTATTATTGGCGATTATGGTTATGGTAATAAATGGTGATGATATTGGTAGCAGAAACATGATTAGTTGGGATGATCTATTGGTTGATGAAGAGAGTCTTTCATACAACAATGATGGACAAGTTTTTGTTGTTGATCAAGCTGGTAATGGTGATTCAACAACAGTTCAAGGTGCTGTTGATATGGTCCAACAAAACAACCCACAAAGAGTCAAGATTTATATATATCCCGGAATTTACAGAGAAAGAGTGCATGTGCCAAAAAACAAGCCATATATTTCATTTATAGGTAAACCAATGATGATGATGAATGCAACAGAGATTGGGAGTGGCATACTACTACCTGTTATTACAAATAGCACAAAGGCATCAGACAAAGGTTCATGGGAGGGGAAAGAATTAGGCATGTCTAATACAGCAACTCTTTGGGTTCAATCCGATTTCTTCTGTGCAACTGCTATTACTATTGAGGAGTGTATACTATACTCAGTAGCTGAGGATTGGGGAGCAATTGCAGCTCATCATAGAAATTCAGCAGAAGAAGATACAGGATTCTCATTTGTTAATTGCAGAATCAAAGGAAATGGTGGTAGAATGTTGCTTGGGAGAGCTTGGGGAGAATACTCAAGAACAGTATATTCCTTCTGTGAAATGGATGATATCATTGACCCCATTGGTTGGAGTGATTGGCATGTTCCATCTAGACAACAGACTGCAGTATTTGGTGAGTATCAGTGTTATGGAAAAGGATCAAATAGAACTGGAAGGGTAGAATGGTCAAAAGAGTTGAGCAATGAAGAAGCTGTGCCTTTTCTTGGTACAAATTATATAAATGGAGATCAATGGCTTAGACTACAATAA	903	0.3699	MMTSSYNKKRILLLLLLLAIMVMVINGDDIGSRNMISWDDLLVDEESLSYNNDGQVFVVDQAGNGDSTTVQGAVDMVQQNNPQRVKIYIYPGIYRERVHVPKNKPYISFIGKPMMMMNATEIGSGILLPVITNSTKASDKGSWEGKELGMSNTATLWVQSDFFCATAITIEECILYSVAEDWGAIAAHHRNSAEEDTGFSFVNCRIKGNGGRMLLGRAWGEYSRTVYSFCEMDDIIDPIGWSDWHVPSRQQTAVFGEYQCYGKGSNRTGRVEWSKELSNEEAVPFLGTNYINGDQWLRLQ	300

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211734g00005	300	Gene3D	-	172	300	IPR012334	-
	Stsc211734g00005	300	SUPERFAMILY	Pectin lyase-like	56	298	IPR011050	-
	Stsc211734g00005	300	Pfam	Pectinesterase	58	117	IPR000070	GO:0030599\|GO:0042545
	Stsc211734g00005	300	Pfam	Pectinesterase	172	294	IPR000070	GO:0030599\|GO:0042545
	Stsc211734g00005	300	Gene3D	-	39	171	IPR012334	-
	Stsc211734g00005	300	PANTHER	ACYL-COA THIOESTER HYDROLASE YBHC-RELATED	23	171	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211734g00005	Stsc-Chr211734	9435	11592	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211734g00005	13	251	Carbohydrate Esterase	AT5G55590	36.826	8.10e-50	166

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211734g00005	K01051		-	gmx:100813382	261.151